View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2813R-Insertion-5 (Length: 617)
Name: NF2813R-Insertion-5
Description: NF2813R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2813R-Insertion-5 |
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Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 11 - 357
Target Start/End: Original strand, 22562090 - 22562436
Alignment:
| Q |
11 |
tatggtgaaaacagaaaactcttaatctatgctgagtttcatcccaccagattataacaacagtcacaggttcaaacccttatgcagaagatcaactgat |
110 |
Q |
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| T |
22562090 |
tatggtgaaaacagaaaactcttcttctatgctgagtttcaccccaccagattataacaacagtcacaggttcaaacccttatgcagaagatcaactgat |
22562189 |
T |
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| Q |
111 |
ggatataattggagaaaagtatcataattttgcagtcatgccatatggtagccaattcatcatgtagttccttctgtaaaagttaaaatacaacaatatc |
210 |
Q |
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| T |
22562190 |
ggatataattggagaaaagtatcataattttgcagtcatgccatatggtagccaattcatcatgtagttccttctgtaaaagttaaaatacaacaatatc |
22562289 |
T |
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| Q |
211 |
aatagacgatgcataagacataggcttaaaagatgcacgtaaagggtacgaacctttgacacgcctagttcttgaggtgtcatagaagtattggacatca |
310 |
Q |
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| T |
22562290 |
aatagacgatgcataaggcataggcttaaaagatgcacataaaaggtacgagcctttgacacgcctagctctagaggtgtcatagaagtgtcggacatca |
22562389 |
T |
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| Q |
311 |
acgcatgtcggacacggcggcacgcctagttctagaggtgtacgtaa |
357 |
Q |
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| T |
22562390 |
acgcatgtcggacacggcggcacgcctagttctagaggtgtacgtaa |
22562436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 389 - 504
Target Start/End: Original strand, 22562649 - 22562764
Alignment:
| Q |
389 |
aatcgcctaaatttttattggcttcaacccaccaccacaagtgtttataggtgggctgcagaacaaaatagccgtgagggacaacaacaattaaaaaatc |
488 |
Q |
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| T |
22562649 |
aatcgcctaaatttttattggcttcaacccaccaccgcaagtgtttataggcgggctgcagatcaaaatagccgccagggacaacaccaattaaaaaatc |
22562748 |
T |
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| Q |
489 |
attcaagcagccgaga |
504 |
Q |
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| T |
22562749 |
attcaagcagccgaga |
22562764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 512 - 565
Target Start/End: Original strand, 22562826 - 22562879
Alignment:
| Q |
512 |
ccgaaaacttcagccattatgccgaataaatgttctcaaaaacctgcaaaatta |
565 |
Q |
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| T |
22562826 |
ccgaaaacttcagccattatgccgaagaaatgttctcaaaaacctacaaaatta |
22562879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 290 - 350
Target Start/End: Complemental strand, 34409386 - 34409326
Alignment:
| Q |
290 |
tcatagaagtattggacatcaacgcatgtcggacacggcggcacgcctagttctagaggtg |
350 |
Q |
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| T |
34409386 |
tcataggagtgtcggacatcaacgcgtgtccgacaccgcgacacgcctagtcctagaggtg |
34409326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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