View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2813R-Insertion-6 (Length: 527)
Name: NF2813R-Insertion-6
Description: NF2813R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2813R-Insertion-6 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 366; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 162 - 527
Target Start/End: Complemental strand, 49979042 - 49978677
Alignment:
| Q |
162 |
ggatatacatacatacattacagatagctagcgtgtctttatgataacaaaatatcactccattacataccatcttgaaatcgattgatcgttgaaggat |
261 |
Q |
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| T |
49979042 |
ggatatacatacatacattacagatagctagcgtgtctttatgataacaaaatatcactccattacataccatcttgaaatcgattgatcgttgaaggat |
49978943 |
T |
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| Q |
262 |
gatgatctggaaaaccttgtccaaccggtgcacctatgcacgtgtaacttgactcacctccacctgccacatattgctgcccattgttactcatcatatg |
361 |
Q |
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| T |
49978942 |
gatgatctggaaaaccttgtccaaccggtgcacctatgcacgtgtaacttgactcacctccacctgccacatattgctgcccattgttactcatcatatg |
49978843 |
T |
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| Q |
362 |
actcacatgacggtaatcgtgaggaaccaaatgtggagggaaagacataggccttgatggtgaagagtacagatattgttgaacttgagatgttgaggat |
461 |
Q |
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| T |
49978842 |
actcacatgacggtaatcgtgaggaaccaaatgtggagggaaagacataggccttgatggtgaagagtacagatattgttgaacttgagatgttgaggat |
49978743 |
T |
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| Q |
462 |
gatgaacctgcagcagagaaggatgttgggaaactcaatggcattgttgggtgatgatgatgatct |
527 |
Q |
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| T |
49978742 |
gatgaacctgcagcagagaaggatgttgggaaactcaatggcattgttgggtgatgatgatgatct |
49978677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 8 - 148
Target Start/End: Complemental strand, 49979208 - 49979068
Alignment:
| Q |
8 |
agaatccaaagtagctgaggttgtgaatgatctcaaaagctgcagcacctagttactgttgttgctatctcttctttcttactcatgatgagtcataacc |
107 |
Q |
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| T |
49979208 |
agaatccaaagtagctgaggttgtgaatgagctcaaaagctgcagcacctagttactgttgttgctatctcttctttcttactcatgatgagtcataacc |
49979109 |
T |
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| Q |
108 |
ctagctatctgtcagcaccttaattaattatgaatcatcta |
148 |
Q |
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| T |
49979108 |
ctagctatctgtcagcaccttaattaattatgaatcatcta |
49979068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 272 - 328
Target Start/End: Original strand, 49952122 - 49952178
Alignment:
| Q |
272 |
aaaaccttgtccaaccggtgcacctatgcacgtgtaacttgactcacctccacctgc |
328 |
Q |
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| T |
49952122 |
aaaaccttgtctaaccggtgcacctatgcaagtgtaacttgactcaccaccacctgc |
49952178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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