View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2813R-Insertion-7 (Length: 463)

Name: NF2813R-Insertion-7
Description: NF2813R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2813R-Insertion-7
NF2813R-Insertion-7
[»] chr1 (1 HSPs)
chr1 (9-463)||(46303286-46303740)


Alignment Details
Target: chr1 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 9 - 463
Target Start/End: Original strand, 46303286 - 46303740
Alignment:
Q  9 ccttcaacaacatagctgacgttctccttgactgggatgatgtacacaatgatgacttttgctcatggcgtggagttttctgtgataacgccagtcatgc 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46303286 ccttcaacaacatagctgacgttctccttgactgggatgatgtacacaatgatgacttttgctcatggcgtggagttttctgtgataacgccagtcatgc 46303385  T
Q  109 tcttactgttgtatctctgtgagtcctttatccctcggtctatatccatcacttgtcttactctctcattaccaacaattttttgtatttgttaatctct 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46303386 tcttactgttgtatctctgtgagtcctttatccctcggtctatatccatcacttgtcttactctctcattaccaacaattttttgtatttgttaatctct 46303485  T
Q  209 aatgnnnnnnncatattaatgaaggaatttgtcaagcttgaaccttggtggtgagatatcaccagcaattggtgatttaagaaacttgcaatccatgtat 308  Q
    ||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46303486 aatgtttttttcatattaatgaaggaatttgtcaagcttgaaccttggtggtgagatatcaccagcaattggtgatttaagaaacttgcaatccatgtat 46303585  T
Q  309 gtcacctcttacttaacattctatgcatctctcataatttagattgaagtcgtgttcactgctcgaaataacactgacccatgtcgttacatttaattga 408  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  46303586 gtcacctcttacttaacattctatgcatctctcatactttagattgaagtcgtgttcactgcttgaaataacactgacccatgtcgttacatttaattga 46303685  T
Q  409 atactttcatattctaaaaatttacttgtgtcgatgtgttagtgtctcgtttgtg 463  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46303686 atactttcatattctaaaaatttacttgtgtcgatgtgttagtgtctcgtttgtg 46303740  T

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