View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2813_low_2 (Length: 258)

Name: NF2813_low_2
Description: NF2813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2813_low_2
NF2813_low_2
[»] chr6 (4 HSPs)
chr6 (9-214)||(27878022-27878227)
chr6 (9-101)||(30968283-30968375)
chr6 (10-181)||(8480120-8480291)
chr6 (143-214)||(30968208-30968279)
[»] chr5 (4 HSPs)
chr5 (9-214)||(34352812-34353017)
chr5 (9-214)||(41719209-41719414)
chr5 (10-125)||(23319180-23319295)
chr5 (29-90)||(31502529-31502590)
[»] chr4 (5 HSPs)
chr4 (9-214)||(48701134-48701339)
chr4 (9-214)||(42266702-42266907)
chr4 (9-214)||(30949496-30949701)
chr4 (10-181)||(1999723-1999894)
chr4 (11-181)||(21514352-21514522)
[»] chr3 (4 HSPs)
chr3 (9-214)||(5822588-5822793)
chr3 (9-214)||(2816576-2816781)
chr3 (10-214)||(42585756-42585960)
chr3 (40-173)||(47277124-47277259)
[»] chr8 (2 HSPs)
chr8 (9-214)||(9443405-9443610)
chr8 (43-214)||(24597829-24598000)
[»] chr2 (2 HSPs)
chr2 (9-214)||(826278-826483)
chr2 (9-214)||(13843110-13843315)
[»] chr7 (1 HSPs)
chr7 (9-214)||(8137771-8137976)
[»] chr1 (1 HSPs)
chr1 (50-118)||(46452552-46452619)


Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 9 - 214
Target Start/End: Original strand, 27878022 - 27878227
Alignment:
Q  9 gacatcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagca 108  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27878022 gacatcatcaaagtgaagagtatcagttatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagca 27878121  T
Q  109 cgctcattttccgctattttgaaatcagaagtcgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacggatgtggattcacccattc 208  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27878122 cgctcattttccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacggatgtggattcacccattc 27878221  T
Q  209 gaagag 214  Q
    ||||||    
T  27878222 gaagag 27878227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 30968375 - 30968283
Alignment:
Q  9 gacatcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaag 101  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30968375 gacatcataaaagtgaagagtatcagatatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaag 30968283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 10 - 181
Target Start/End: Original strand, 8480120 - 8480291
Alignment:
Q  10 acatcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagcac 109  Q
    ||||||||||| |||||||  ||| | || || || ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||    
T  8480120 acatcatcaaaatgaagagagtcaacaatattgttgtttgtaatgttgatgatgagttgatcatatgaatcaggtaaactctgaagtagaagttctgcac 8480219  T
Q  110 gctcattttccgctattttgaaatcagaagtcgtgagttgagaaaatagcgtattcagggtgttgatgtgat 181  Q
    | | |||||| |||||  ||||||| || || ||||| |||| |||||| ||||||| |||||| |||||||    
T  8480220 gtttattttcagctatcatgaaatctgatgttgtgagctgagcaaatagtgtattcatggtgtttatgtgat 8480291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 143 - 214
Target Start/End: Complemental strand, 30968279 - 30968208
Alignment:
Q  143 tgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacggatgtggattcacccattcgaagag 214  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  30968279 tgagttgagaaaatagcgtattcagggtgttgatgtgattcgttacggatgtggattcacccattcgaagag 30968208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 9 - 214
Target Start/End: Complemental strand, 34353017 - 34352812
Alignment:
Q  9 gacatcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagca 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34353017 gacatcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagca 34352918  T
Q  109 cgctcattttccgctattttgaaatcagaagtcgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacggatgtggattcacccattc 208  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34352917 cgctcattctccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacggatgtggattcacccattc 34352818  T
Q  209 gaagag 214  Q
    ||||||    
T  34352817 gaagag 34352812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 9 - 214
Target Start/End: Complemental strand, 41719414 - 41719209
Alignment:
Q  9 gacatcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagca 108  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41719414 gacatcatcaaagtgaagagtatcagttatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagca 41719315  T
Q  109 cgctcattttccgctattttgaaatcagaagtcgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacggatgtggattcacccattc 208  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41719314 cgctcattttccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacggatgtggattcacccattc 41719215  T
Q  209 gaagag 214  Q
    ||||||    
T  41719214 gaagag 41719209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 10 - 125
Target Start/End: Complemental strand, 23319295 - 23319180
Alignment:
Q  10 acatcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagcac 109  Q
    ||||||||||| |||||||  ||||| || || || ||||||||||||||||||||||| ||||| ||||  ||||||||||||||||||||||  ||||    
T  23319295 acatcatcaaaatgaagagagtcagcaatattgttgtttgtaatgttgatgatgagttgttcatatgaatgaggtaaactctgaagtagaagttttgcac 23319196  T
Q  110 gctcattttccgctat 125  Q
    | |||||||| |||||    
T  23319195 gttcattttcagctat 23319180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 29 - 90
Target Start/End: Original strand, 31502529 - 31502590
Alignment:
Q  29 tatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactc 90  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  31502529 tatcatctatattattatttgtaatgttgatgatgagttgatcatacgaatcttgtaaactc 31502590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 9 - 214
Target Start/End: Original strand, 48701134 - 48701339
Alignment:
Q  9 gacatcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagca 108  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48701134 gacatcatcaaagtgaagagtatcagttatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagca 48701233  T
Q  109 cgctcattttccgctattttgaaatcagaagtcgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacggatgtggattcacccattc 208  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48701234 cgctcattttccgctattttgaaatcagaagccgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacggatgtggattcacccattc 48701333  T
Q  209 gaagag 214  Q
    ||||||    
T  48701334 gaagag 48701339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 9 - 214
Target Start/End: Complemental strand, 42266907 - 42266702
Alignment:
Q  9 gacatcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagca 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42266907 gacatcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagca 42266808  T
Q  109 cgctcattttccgctattttgaaatcagaagtcgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacggatgtggattcacccattc 208  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  42266807 cgctcattttccgctattttgaaatcagaagctgtgagttgagaaaatagcgtattcagggtgttgatgtgatctgttacggatgtggattcacccattc 42266708  T
Q  209 gaagag 214  Q
    ||||||    
T  42266707 gaagag 42266702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 9 - 214
Target Start/End: Original strand, 30949496 - 30949701
Alignment:
Q  9 gacatcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagca 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  30949496 gacatcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctggagtagaagttcagca 30949595  T
Q  109 cgctcattttccgctattttgaaatcagaagtcgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacggatgtggattcacccattc 208  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  30949596 cgctcattttccgctattttgaaatcagaagctgtgagttgagaaaatagcgtattcagggtgttgatgtgatctgttacggatgtggattcacccattc 30949695  T
Q  209 gaagag 214  Q
    ||||||    
T  30949696 gaagag 30949701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 10 - 181
Target Start/End: Complemental strand, 1999894 - 1999723
Alignment:
Q  10 acatcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagcac 109  Q
    ||||||||||| |||||||  ||||| || || |   ||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||    
T  1999894 acatcatcaaaatgaagagagtcagcaatattgtatattgtaatattgatgatgagttgatcatatgaatcaggtaaactctgaagtagaagttctgcac 1999795  T
Q  110 gctcattttccgctattttgaaatcagaagtcgtgagttgagaaaatagcgtattcagggtgttgatgtgat 181  Q
    | |||||||| |||||| ||||||| || |  |||||||||| |||||| ||||||| ||| || |||||||    
T  1999794 gttcattttcagctattgtgaaatctgaggctgtgagttgaggaaatagtgtattcatggtatttatgtgat 1999723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 181
Target Start/End: Original strand, 21514352 - 21514522
Alignment:
Q  11 catcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagcacg 110  Q
    |||||||||| ||||| |||||| | |  |||| |||  ||||||||| |||||||| ||||||| |||||| ||||  || ||||||||||| | | |     
T  21514352 catcatcaaaatgaagggtatcaaccacattatcattgataatgttgacgatgagtttatcatacaaatctgataaaaactaaagtagaagtttaactct 21514451  T
Q  111 ctcattttccgctattttgaaatcagaagtcgtgagttgagaaaatagcgtattcagggtgttgatgtgat 181  Q
    |||| |||||| |||| ||||||  ||||| || |||||  |||||| |||||| ||||| ||||||||||    
T  21514452 ctcactttccgttattctgaaatttgaagttgtaagttggaaaaataacgtatttagggtattgatgtgat 21514522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 9 - 214
Target Start/End: Original strand, 5822588 - 5822793
Alignment:
Q  9 gacatcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagca 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5822588 gacatcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagca 5822687  T
Q  109 cgctcattttccgctattttgaaatcagaagtcgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacggatgtggattcacccattc 208  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5822688 cgctcattttccgctattttgaaatcagaagctgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacggatgtggattcacccattc 5822787  T
Q  209 gaagag 214  Q
    ||||||    
T  5822788 gaagag 5822793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 9 - 214
Target Start/End: Original strand, 2816576 - 2816781
Alignment:
Q  9 gacatcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagca 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  2816576 gacatcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctaaagtagaagttcagca 2816675  T
Q  109 cgctcattttccgctattttgaaatcagaagtcgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacggatgtggattcacccattc 208  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2816676 cgctcattttccgctattttgaaatcagaagctgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacggatgtggattcacccattc 2816775  T
Q  209 gaagag 214  Q
    ||||||    
T  2816776 gaagag 2816781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 10 - 214
Target Start/End: Complemental strand, 42585960 - 42585756
Alignment:
Q  10 acatcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagcac 109  Q
    ||||||||||| |||||||  ||| | || || ||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||    
T  42585960 acatcatcaaaatgaagagagtcaacaatattgttatttgtaatattgatgatgagttgatcatatgaatcaggtaaactctgaagtagaagttctgcac 42585861  T
Q  110 gctcattttccgctattttgaaatcagaagtcgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacggatgtggattcacccattcg 209  Q
    | |||||||| |||||| ||||||| || |  ||||| |||| |||||| ||||||| ||| || |||||||  ||||  ||| ||||||||  ||||||    
T  42585860 gttcattttcagctattgtgaaatctgaggctgtgagctgagcaaatagtgtattcatggtatttatgtgatttgttattgatatggattcattcattcg 42585761  T
Q  210 aagag 214  Q
     ||||    
T  42585760 gagag 42585756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 40 - 173
Target Start/End: Original strand, 47277124 - 47277259
Alignment:
Q  40 ttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttca--gcacgctcattttccgctattttgaaatcaga 137  Q
    ||||| || ||||||||||||||||| ||||||||| ||  |||| ||||| ||||||||||||||   ||| ||||||||||||| || | |||  |||    
T  47277124 ttattgttggtaatgttgatgatgaggtgatcatacaaagatggttaactcagaagtagaagttcaacacacactcattttccgcttttctaaaacgaga 47277223  T
Q  138 agtcgtgagttgagaaaatagcgtattcagggtgtt 173  Q
    ||| ||||| ||||||||| || |||||| ||||||    
T  47277224 agttgtgagatgagaaaattgcatattcaaggtgtt 47277259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 9 - 214
Target Start/End: Original strand, 9443405 - 9443610
Alignment:
Q  9 gacatcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagca 108  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9443405 gacatcattaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagca 9443504  T
Q  109 cgctcattttccgctattttgaaatcagaagtcgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacggatgtggattcacccattc 208  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  9443505 cgctcattttccgctattttgaaatcagaagctgtgagttgagaaaatagcgtattcagggtgttgatgtgatctgttacggatgtggattcacccattc 9443604  T
Q  209 gaagag 214  Q
    ||||||    
T  9443605 gaagag 9443610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 43 - 214
Target Start/End: Original strand, 24597829 - 24598000
Alignment:
Q  43 ttatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagcacgctcattttccgctattttgaaatcagaagtcg 142  Q
    ||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||| |||||||| |||||| ||||||| || |  |    
T  24597829 ttatttgtaatattgatgatgagttgatcatatgaatcaggtaaactctgaagtagaagttctgcacgttcattttcagctattgtgaaatctgaggctg 24597928  T
Q  143 tgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacggatgtggattcacccattcgaagag 214  Q
    |||| |||| |||||| ||||||| ||| || |||||||  ||||  ||| ||||||||  |||||| ||||    
T  24597929 tgagctgagcaaatagtgtattcatggtatttatgtgatttgttattgatatggattcattcattcggagag 24598000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 9 - 214
Target Start/End: Complemental strand, 826483 - 826278
Alignment:
Q  9 gacatcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagca 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  826483 gacatcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagca 826384  T
Q  109 cgctcattttccgctattttgaaatcagaagtcgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacggatgtggattcacccattc 208  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  826383 cgctcattttccgctattttgaaatcagaagctgtgagttgagaaaatagcgtattaagggtgttgatgtgatctgttacggatgtggattcacccattc 826284  T
Q  209 gaagag 214  Q
    ||||||    
T  826283 gaagag 826278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 9 - 214
Target Start/End: Original strand, 13843110 - 13843315
Alignment:
Q  9 gacatcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagca 108  Q
    ||||||||||||||||||||| ||| |||| || ||||||||||||||||||||||||||||||||| ||| || || ||| ||||||||||||||| ||    
T  13843110 gacatcatcaaagtgaagagtgtcaactatattgttatttgtaatgttgatgatgagttgatcatacaaatttgatatactatgaagtagaagttcaaca 13843209  T
Q  109 cgctcattttccgctattttgaaatcagaagtcgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacggatgtggattcacccattc 208  Q
     |||||||||| |||||| ||||||||||||| || |||||||||||||| ||||||| ||| || |||||||  ||||  ||||||||||||| |||||    
T  13843210 tgctcattttctgctattatgaaatcagaagttgtaagttgagaaaatagtgtattcaaggtcttaatgtgatatgttattgatgtggattcactcattc 13843309  T
Q  209 gaagag 214  Q
     |||||    
T  13843310 taagag 13843315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 9 - 214
Target Start/End: Original strand, 8137771 - 8137976
Alignment:
Q  9 gacatcatcaaagtgaagagtatcagctatgttattatttgtaatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagca 108  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||  ||    
T  8137771 gacattatcaaagtgaagagtatcagctatgttattatttggaatgttgatgatgagttgatcatacaaatatggtaaactctgaagtagaagttccaca 8137870  T
Q  109 cgctcattttccgctattttgaaatcagaagtcgtgagttgagaaaatagcgtattcagggtgttgatgtgatccgttacggatgtggattcacccattc 208  Q
    ||||||||||||||||||||||||| |||||| | || || |||||||| |||||||||||||||||||||||| |||| | ||||||||||||||||||    
T  8137871 cgctcattttccgctattttgaaattagaagttgggattttagaaaataccgtattcagggtgttgatgtgatctgttatgaatgtggattcacccattc 8137970  T
Q  209 gaagag 214  Q
    ||||||    
T  8137971 gaagag 8137976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 118
Target Start/End: Complemental strand, 46452619 - 46452552
Alignment:
Q  50 taatgttgatgatgagttgatcatacgaatctggtaaactctgaagtagaagttcagcacgctcatttt 118  Q
    |||||||||||||||||| |||||| || |||  |||||| ||||||||||||| ||||| ||||||||    
T  46452619 taatgttgatgatgagttcatcatagga-tctaataaactatgaagtagaagtttagcacactcatttt 46452552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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