View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2814_high_1 (Length: 1092)
Name: NF2814_high_1
Description: NF2814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2814_high_1 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 994; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 994; E-Value: 0
Query Start/End: Original strand, 16 - 1083
Target Start/End: Complemental strand, 30401554 - 30400487
Alignment:
| Q |
16 |
agaagaaggaaaactaataacatacttttaaacaaacatttgtcaaaacttcccttgtccaaatattcatataccaaaattgggtagacatcctctaagc |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30401554 |
agaagaaggaaaactaataacatacttttaaacaaacatttgtcaaaacttcccttgtccaaatattcatataccaaaattgggtagacatcctctaagc |
30401455 |
T |
|
| Q |
116 |
agtaaccaatcagtctcacaagattaggatgactcagctgccccatgttg---atttttctctataataaaatcacatcacactaaattataaatatata |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30401454 |
agtaaccaatcagtctcacaagattaggatgacacagcttccccatgttgttgatttttctctataataaaatcacatcacactaaattataaatatata |
30401355 |
T |
|
| Q |
213 |
aaaaagaaccatctattttgctacacaagttatatgaaacagttttcccaacttcagaattcaactagttctcaagctttgagtaaacttttcaagtaac |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30401354 |
aaaaagaaccatctattttgctacacaagttatatgaaacagttttcccaacttcagaattcaactagttctcaagctttgagtaaacttttcaagtaac |
30401255 |
T |
|
| Q |
313 |
gtactcaccaaccattcactgggttcctggtggctcgcattgttaagcttcttcacagcaacagtcaaaccagaacctggtttagtggggcctaacgtgt |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30401254 |
gtactcaccaaccattcactgggttcctggtggctcgcattgttaagcttcttcacagcaacagtcaaaccagaacctggtttagtggggcctaacgtgt |
30401155 |
T |
|
| Q |
413 |
gctcatcgatccacccctttacataaaactcatcttcggtcacttgactatctggaaccaagttccctgttgcagtttttaattcctttaatgtgaagca |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30401154 |
gctcatcgatccacccctttacataaaactcatcttcggtcacttgactatctggaaccaagttccctgttgcagtttttaattcctttaatgtgaagca |
30401055 |
T |
|
| Q |
513 |
tttcaaagcccatgaagatcaggtggcattgctgattaaaccaatcatagtatcatcttctctcccatctacctttgaattcaaacctgtccatatcaaa |
612 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30401054 |
tttcaaagcccatgaag---aggtggcattgctgattaaaccaatcatagtatcatcttctctcccatctacctttgaattcaaacctgtccatatcaaa |
30400958 |
T |
|
| Q |
613 |
ataaaacatgaattaactatacaattctcttttacgctcataattttgttttttgaaaatgagtcggagactgtagaagaaaagaaattacagatttagt |
712 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
30400957 |
ataaaacatgaattaactatacaattctcttttacgctcataattttgttttttgaaaatgagtcggagactatagaagaaaagaaattacagatttagt |
30400858 |
T |
|
| Q |
713 |
aacattattgcaatcatataaatgaactacannnnnnncctaagtacattcttgtgaaataaggtaacttttttgcgttggctgaactaacggtcttctt |
812 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30400857 |
aacattattgcaatcatataaatgaactacatttttttcctaagtacattctcgtgaaataaggtaacttttttgcgttggctgaactaacggtcttctt |
30400758 |
T |
|
| Q |
813 |
acctaaatccaagatttattctcaataattaaaagtatatgaattgtatagagacgagaatgtaacaacagattaccccctcaaaaatttaaaacaaatt |
912 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30400757 |
acctaaatccaagatttattctcaataattaaaagtatatgaattgtatagagacaagaatgtaacaacagattaccccctcaaaaatttaaaacaaatt |
30400658 |
T |
|
| Q |
913 |
tccataccaagtagcaaaatttattcacaaacatacagaagattggtcattaattaagaaatgaaaatgtgaataacagtgttatttattaccgttatat |
1012 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30400657 |
tccataccaagtagcaaaatttattcacaaacatacacaagattggtcattaattaagaaatgaaaatgtgaataacagtgttatttattaccgttatat |
30400558 |
T |
|
| Q |
1013 |
gaatgactcttcctctcagttttgacccttgagctaatgcagccacccatgccagtgtgttattgatgatg |
1083 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
30400557 |
gaatgactcttcctctcagttttgacccttgagctaatgcagccatccatgccagtgtgttattgatgatg |
30400487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 164; E-Value: 4e-87
Query Start/End: Original strand, 109 - 386
Target Start/End: Complemental strand, 30388948 - 30388647
Alignment:
| Q |
109 |
tctaagcagtaaccaatcagtctcacaagattaggatgactcagctgccccatgttg---atttttctctataataaaatcacatcacactaaattataa |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
30388948 |
tctaagcagtaaccaatcagtctcacaagattaggatgactcagctgccccatgttgttgatttttctctataataaaatcacatcaaactaaattataa |
30388849 |
T |
|
| Q |
206 |
atatataaaaaagaaccatctattttgctacacaagttatatgaaaca---------------------gttttcccaacttcagaattcaactagttct |
284 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
30388848 |
atatctaaaaaagaaccatctattttgctacagaagttatatgaaacaattttccaaaaataatttgatattttcccaacttcagaattcaactagttct |
30388749 |
T |
|
| Q |
285 |
caagctttgagtaaacttttcaagtaacgtactcaccaaccattcactgggttcctggtggctcgcattgttaagcttcttcacagcaacagtcaaacca |
384 |
Q |
| |
|
|||||||| ||||| ||||| |||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| || |||||| |
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| T |
30388748 |
caagcttttggtaaaattttcgagtaacatactcaccaaccattcactgggttcctggtggctcacatggttaagcttcttcacagcaattgtaaaacca |
30388649 |
T |
|
| Q |
385 |
ga |
386 |
Q |
| |
|
|| |
|
|
| T |
30388648 |
ga |
30388647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 30 - 147
Target Start/End: Complemental strand, 30421933 - 30421816
Alignment:
| Q |
30 |
taataacatacttttaaacaaacatttgtcaaaacttcccttgtccaaatattcatataccaaaattgggtagacatcctctaagcagtaaccaatcagt |
129 |
Q |
| |
|
||||||||||||| |||||||| || || |||||||||||| || | |||||||||||||||| ||||| ||||||||||||||||||| |||||| |
|
|
| T |
30421933 |
taataacatacttctaaacaaatgattatccaaacttcccttggtcacaaattcatataccaaaatccggtagtcatcctctaagcagtaacctatcagt |
30421834 |
T |
|
| Q |
130 |
ctcacaagattaggatga |
147 |
Q |
| |
|
|||| ||||| |||||| |
|
|
| T |
30421833 |
ttcactagatttggatga |
30421816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 34 - 158
Target Start/End: Complemental strand, 30411620 - 30411496
Alignment:
| Q |
34 |
aacatacttttaaacaaacatttgtcaaaacttcccttgtccaaatattcatataccaaaattgggtagacatcctctaagcagtaaccaatcagtctca |
133 |
Q |
| |
|
||||||||| |||||||| || || |||||||||| | ||||| |||| || || |||||| ||||| ||||||||| ||||||||||||||| ||| |
|
|
| T |
30411620 |
aacatacttctaaacaaatgattatccaaacttccctcggccaaaaattcgtacacaaaaattcggtagctatcctctaatcagtaaccaatcagtttca |
30411521 |
T |
|
| Q |
134 |
caagattaggatgactcagctgccc |
158 |
Q |
| |
|
| |||||||||||| ||||||||| |
|
|
| T |
30411520 |
cgagattaggatgatgcagctgccc |
30411496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 315 - 431
Target Start/End: Complemental strand, 30408440 - 30408324
Alignment:
| Q |
315 |
actcaccaaccattcactgggttcctggtggctcgcattgttaagcttcttcacagcaacagtcaaaccagaacctggtttagtggggcctaacgtgtgc |
414 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||| ||||||||| | || ||||||||||| ||||||| ||||||||| || || || | ||||| |
|
|
| T |
30408440 |
actcaccaaccattcactatgttcctggttgctttcattgttaaacatcatcacagcaacaacaaaaccagtacctggtttcgtaggagcttgcatgtgc |
30408341 |
T |
|
| Q |
415 |
tcatcgatccacccctt |
431 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
30408340 |
tcatcgatccacccctt |
30408324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 107 - 158
Target Start/End: Complemental strand, 30408648 - 30408597
Alignment:
| Q |
107 |
cctctaagcagtaaccaatcagtctcacaagattaggatgactcagctgccc |
158 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||||||| ||||||||| |
|
|
| T |
30408648 |
cctctaagcagtaaccaatcagtttcacgagattaggatgacgcagctgccc |
30408597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 102 - 155
Target Start/End: Complemental strand, 31445351 - 31445298
Alignment:
| Q |
102 |
gacatcctctaagcagtaaccaatcagtctcacaagattaggatgactcagctg |
155 |
Q |
| |
|
|||| ||||||||||||||||||||||| | |||||||||||||||| |||||| |
|
|
| T |
31445351 |
gacaacctctaagcagtaaccaatcagtttgacaagattaggatgacgcagctg |
31445298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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