View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2814_high_10 (Length: 426)
Name: NF2814_high_10
Description: NF2814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2814_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 17 - 415
Target Start/End: Complemental strand, 40381350 - 40380951
Alignment:
| Q |
17 |
acaactagaggtatatccttcaatttcttatatgcatcactttgcgactgcataatttatagtgcatactcgataacaaggttttgaatcattgcggctg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
40381350 |
acaactagaggtatatccttcaatttcttatatgcatcactttgcgactgcataatttatagcacatactcgataacaaggttttgaatcattgcggctg |
40381251 |
T |
|
| Q |
117 |
caccatgaacttcaattttcaatgtcattcatcgccattatcaagtgtatatttaaaca-annnnnnnnngagggatttaaacacaaagtttggttacta |
215 |
Q |
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| T |
40381250 |
cgccatgaacttcaattttcaatgtcattcatcgccattgtcaagtgtatatttaaacacaattttttttgagggatttaaacacaaagtttggttactg |
40381151 |
T |
|
| Q |
216 |
aattcaattgtcaagtgtattatagctaaccttaaattgactttagtaaccaaacttgttgttatcataatacaaaactaaccttaactgaaaattagaa |
315 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |
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| T |
40381150 |
aattcaattgtcaagtgtattataactaaccttaaattgactttagtaaccaaacttgttgttatcataatacaaaagtaaccttaactgaaaattacaa |
40381051 |
T |
|
| Q |
316 |
tgagatcgttcaaaccacctcatttaaaaataacaacaatgagcaacccctacagctgctaagcatctcatatgttcttctttgccagaaatcgcttcat |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40381050 |
tgagatcgttcaaaccacctcatttaaaaataacaacaatgagcaacccctacagctgctaagcatctcatatgttcttctttgccagaaatcgcttcat |
40380951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 282 - 407
Target Start/End: Complemental strand, 40393314 - 40393193
Alignment:
| Q |
282 |
ataatacaaaactaaccttaactgaaaattagaatgagatcgttcaaaccacctcatttaaaaataacaacaatgagcaacccctacagctgctaagcat |
381 |
Q |
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| T |
40393314 |
ataatacaaaactaaccttaacagaaaattacaatgagaccattcaaactacacaatttagaaataacaa---tgagcaacccctatagctgctaagcat |
40393218 |
T |
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| Q |
382 |
ctcatatgttcttctttgccagaaat |
407 |
Q |
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| T |
40393217 |
ctcatatgttcttc-ttgccagaaat |
40393193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 283 - 358
Target Start/End: Original strand, 52412198 - 52412273
Alignment:
| Q |
283 |
taatacaaaactaaccttaactgaaaattagaatgagatcgttcaaaccacctcatttaaaaataacaacaatgag |
358 |
Q |
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| T |
52412198 |
taatacaaaactaactctaactgaaaattacaatgagaacattcaaactacgccatttagaaataaaaacaatgag |
52412273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 21 - 175
Target Start/End: Complemental strand, 22809942 - 22809786
Alignment:
| Q |
21 |
ctagaggtatatccttcaatttcttatatgcatcactttgcgact--gcataatttatagtgcatactcgataacaaggttttgaatcattgcggctgca |
118 |
Q |
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| T |
22809942 |
ctagaggtacattcttgaattttttatatacatcactttgcgactatgcatagtttatagtacacactcaagaacaaggttttgaatcgttgcggctgcg |
22809843 |
T |
|
| Q |
119 |
ccatgaacttcaattttcaatgtcattcatcgccattatcaagtgtatatttaaaca |
175 |
Q |
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|||||||| ||| ||| ||||||||||||| | |||||| | |||||||||||||| |
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| T |
22809842 |
ccatgaacctcagtttcgaatgtcattcatcacaattatccaatgtatatttaaaca |
22809786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 336 - 394
Target Start/End: Original strand, 14684738 - 14684796
Alignment:
| Q |
336 |
catttaaaaataacaacaatgagcaacccctacagctgctaagcatctcatatgttctt |
394 |
Q |
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|||||| ||| ||||| ||||||||||||||| | ||||||||||||||||||||||| |
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| T |
14684738 |
catttagaaacaacaaaaatgagcaacccctataattgctaagcatctcatatgttctt |
14684796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 336 - 394
Target Start/End: Complemental strand, 17663383 - 17663325
Alignment:
| Q |
336 |
catttaaaaataacaacaatgagcaacccctacagctgctaagcatctcatatgttctt |
394 |
Q |
| |
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|||||| ||| ||||| ||||||||||||||| | ||||||||||||||||||||||| |
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| T |
17663383 |
catttagaaacaacaaaaatgagcaacccctataattgctaagcatctcatatgttctt |
17663325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 358
Target Start/End: Complemental strand, 7773625 - 7773553
Alignment:
| Q |
286 |
tacaaaactaaccttaactgaaaattagaatgagatcgttcaaaccacctcatttaaaaataacaacaatgag |
358 |
Q |
| |
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|||||||||||| ||| ||||||||| ||||||| | ||||||| || |||||| |||||||||||||||| |
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| T |
7773625 |
tacaaaactaactctaattgaaaattacaatgagaacattcaaactacgccatttagaaataacaacaatgag |
7773553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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