View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2814_high_19 (Length: 263)
Name: NF2814_high_19
Description: NF2814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2814_high_19 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 31 - 222
Target Start/End: Complemental strand, 24413222 - 24413024
Alignment:
| Q |
31 |
agttactaaaggaaagctgattatggagcattgcaagaatgagatgcagat-------gcaatgactaagccattgaagatagagacatttgaaagactt |
123 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
24413222 |
agttaccaaaggaaagctgattctggagcattgcaagactgagatgcagattgcagatgcaatgactaagccattgaagatagtgacatttgaaagactt |
24413123 |
T |
|
| Q |
124 |
agaagaatgatgggcatgatggattcagcaaacatgaattacggaagagtgttggaatatgttaattcaagtttgtattagactatatacccgttgggg |
222 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24413122 |
agaagaatgatgggcatggtggattcagcaaacatgaattaaggaagagtgttggaatgcgttaattcaagtttgtattagactatatacccgttgggg |
24413024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 70 - 192
Target Start/End: Original strand, 8531507 - 8531629
Alignment:
| Q |
70 |
tgagatgcagatgcaatgactaagccattgaagatagagacatttgaaagacttagaagaatgatgggcatgatggattcagcaaacatgaattacggaa |
169 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |||||||||||| || ||||||||||||||||||||| | |||||| ||||||||||||| |||| |
|
|
| T |
8531507 |
tgagatgcagatgcaataactaagccattgaagacagagacatttgagaggcttagaagaatgatgggcatggttgattcaacaaacatgaattaaggaa |
8531606 |
T |
|
| Q |
170 |
gagtgttggaatatgttaattca |
192 |
Q |
| |
|
|||||||| | | |||||||||| |
|
|
| T |
8531607 |
gagtgttgaattgtgttaattca |
8531629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 201 - 263
Target Start/End: Complemental strand, 44912805 - 44912743
Alignment:
| Q |
201 |
ttagactatatacccgttggggtatataatatacacgttggagtataaaagtttgttccaagt |
263 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||| |||| ||||||||||||||| ||||| |
|
|
| T |
44912805 |
ttagactatatacccgttcgggtatatattatacatattggggtataaaagtttgttacaagt |
44912743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 176
Target Start/End: Complemental strand, 5567972 - 5567920
Alignment:
| Q |
124 |
agaagaatgatgggcatgatggattcagcaaacatgaattacggaagagtgtt |
176 |
Q |
| |
|
||||| ||||||| |||| || ||||| ||||||||||||| ||||||||||| |
|
|
| T |
5567972 |
agaagcatgatggacatggtgaattcaacaaacatgaattaaggaagagtgtt |
5567920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 176
Target Start/End: Original strand, 21549223 - 21549320
Alignment:
| Q |
83 |
caatgactaagccattgaagatagagacatttgaaagacttagaagaatgatgggcatgatgg----attcagcaaacatgaattacggaagagtgtt |
176 |
Q |
| |
|
||||||| ||| | |||||||| || ||||||||| || | ||||| |||||||||||| ||| ||||| |||||||||||| ||||||||||| |
|
|
| T |
21549223 |
caatgacaaaggctttgaagattgaaacatttgaatgattgagaagcatgatgggcatggtgggtgaattcaaaaaacatgaattaaggaagagtgtt |
21549320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University