View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2814_high_27 (Length: 234)
Name: NF2814_high_27
Description: NF2814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2814_high_27 |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 12 - 214
Target Start/End: Original strand, 9761493 - 9761695
Alignment:
| Q |
12 |
gagcagagatagtgaaaattcagcattgtgtgatatgccacaatcaatccattttcatttaataaacttccaccaaatattttactcttgctgcatgatc |
111 |
Q |
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| T |
9761493 |
gagcagagatagtgaaaattcagcattgtgtgatatgccacaatcaatccattttcatttaataaacttccaccaaatattttactcttgctgcatgatc |
9761592 |
T |
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| Q |
112 |
ctttcttttattagccatatttagttgatgctttaatcacaagcgtgaaagggaaagaacacaaagaatgaacgaatgtcactttgtgaactatccttca |
211 |
Q |
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| T |
9761593 |
ctttcttttattagccatatttagttgatgctttaatcacaagcgtgaaagggaaagaacacaaagaatgaacaaatgtcactttgtgaactatccttca |
9761692 |
T |
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| Q |
212 |
tgt |
214 |
Q |
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| T |
9761693 |
tgt |
9761695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 179
Target Start/End: Original strand, 35656468 - 35656622
Alignment:
| Q |
22 |
agtgaaaattcagcattgtgtgatatgccacaatcaatccattttcatttaataaacttccaccaaatattttactcttgctgcatgatcctttctttta |
121 |
Q |
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||||||||||||||||| | || |||| | | ||||| ||||||||||||||||| | ||| ||||| |||||||| |||||||||||||| ||||| |
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| T |
35656468 |
agtgaaaattcagcattctatggtatgtctccatcaaggcattttcatttaataaattacca--aaataatttactctcgctgcatgatccttccttttt |
35656565 |
T |
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| Q |
122 |
ttagccatatttagttgatgctttaatcacaagcgtgaaagggaaagaacacaaagaa |
179 |
Q |
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| T |
35656566 |
ttaaccacatttagtctatgcttt-accacaggcgtgactgagaaagaatacaaagaa |
35656622 |
T |
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