View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2814_high_32 (Length: 202)
Name: NF2814_high_32
Description: NF2814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2814_high_32 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 172; Significance: 1e-92; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 15 - 186
Target Start/End: Complemental strand, 2088735 - 2088564
Alignment:
| Q |
15 |
atgaacaataaagcgctaaatcgctaaataaataccctgcgaatgtgttggatggtgcatgagtgaaagtcacccttcagctccaaagcctcgttacata |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2088735 |
atgaacaataaagcgctaaatcgctaaataaataccctgcgaatgtgttggatggtgcatgagtgaaagtcacccttcagctccaaagcctcgttacata |
2088636 |
T |
|
| Q |
115 |
agctccttaaatttgcattgtagatgttacatgaacccttaaactgttgcaaaaccaataacatatcttagt |
186 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2088635 |
agctccttaaatttgcattgtagatgttacatgaacccttaaactgttgcaaaaccaataacatatcttagt |
2088564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 45 - 180
Target Start/End: Complemental strand, 2054499 - 2054364
Alignment:
| Q |
45 |
aataccctgcgaatgtgttggatggtgcatgagtgaaagtcacccttcagctccaaagcctcgttacataagctccttaaatttgcattgtagatgttac |
144 |
Q |
| |
|
|||||||| |||||||||||||| || ||||||||||| ||||||||| ||||||||| || || ||| ||| ||||| |||| ||| || | |
|
|
| T |
2054499 |
aataccctaggaatgtgttggatgctgaatgagtgaaagctttccttcagctgcaaagcctcattgcacaagttccataaatactggttgttgattttcc |
2054400 |
T |
|
| Q |
145 |
atgaacccttaaactgttgcaaaaccaataacatat |
180 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |
|
|
| T |
2054399 |
atgaacccagaaactgttgcaaaaccaataacatat |
2054364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 76 - 178
Target Start/End: Complemental strand, 2106909 - 2106808
Alignment:
| Q |
76 |
agtgaaagtcacccttcagctccaaagcctcgttacataagctccttaaatttgcattgtagatgttacatgaacccttaaactgttgcaaaaccaataa |
175 |
Q |
| |
|
||||||||| | || | |||||||||||||| || |||||| ||||||||| ||||||| |||||| ||| |||| || ||||||||||||| |||||| |
|
|
| T |
2106909 |
agtgaaagttatcccttagctccaaagcctcattgcataagttccttaaataagcattgttgatgttccataaacctttcaactgttgcaaaa-caataa |
2106811 |
T |
|
| Q |
176 |
cat |
178 |
Q |
| |
|
||| |
|
|
| T |
2106810 |
cat |
2106808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 180
Target Start/End: Complemental strand, 2098451 - 2098348
Alignment:
| Q |
76 |
agtgaaagtcacccttcagctccaaagcctcgttacataagctccttaaatttgcattgtagatgttacatgaacccttaaactgttgcaaaaccaataa |
175 |
Q |
| |
|
||||||||| | || | |||||||| ||||| || |||||| ||||||||| ||||||| |||||| ||| |||| || | ||||||||||| |||||| |
|
|
| T |
2098451 |
agtgaaagttatcccttagctccaaggcctcattgcataagttccttaaatgagcattgttgatgttccataaacctttcagctgttgcaaaa-caataa |
2098353 |
T |
|
| Q |
176 |
catat |
180 |
Q |
| |
|
||||| |
|
|
| T |
2098352 |
catat |
2098348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 175
Target Start/End: Complemental strand, 2102689 - 2102603
Alignment:
| Q |
89 |
cttcagctccaaagcctcgttacataagctccttaaatttgcattgtagatgttacatgaacccttaaactgttgcaaaaccaataa |
175 |
Q |
| |
|
||||||||||| |||||| || || | | |||||||||||| ||||| || || || ||||||| ||||||||||||| ||||||| |
|
|
| T |
2102689 |
cttcagctccacagcctcattgcacaggttccttaaatttggattgttgactttccaggaaccctcaaactgttgcaaacccaataa |
2102603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 180
Target Start/End: Complemental strand, 2058369 - 2058333
Alignment:
| Q |
144 |
catgaacccttaaactgttgcaaaaccaataacatat |
180 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |
|
|
| T |
2058369 |
catgaacccaaaaactgttgcaaaaccaataacatat |
2058333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 89 - 175
Target Start/End: Original strand, 39182998 - 39183084
Alignment:
| Q |
89 |
cttcagctccaaagcctcgttacataagctccttaaatttgcattgtagatgttacatgaacccttaaactgttgcaaaaccaataa |
175 |
Q |
| |
|
||||||||||| |||||| ||||| | | |||||||||||| |||| || || || ||||||| ||||||||||||||||||||| |
|
|
| T |
39182998 |
cttcagctccacagcctcattacaaaggttccttaaatttgggttgttgactttccaggaaccctcaaactgttgcaaaaccaataa |
39183084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University