View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2814_high_5 (Length: 553)
Name: NF2814_high_5
Description: NF2814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2814_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 454; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 18 - 547
Target Start/End: Complemental strand, 36359887 - 36359358
Alignment:
| Q |
18 |
aaaactcatgcaaaaggaacaaaaagaaagtaagatatcacaaacaacgtcccaatattttaatcaagtcaattatgaatcaatgaatctatataataat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36359887 |
aaaactcatgcaaaaggaacaaaaagaaagtaagatatcacaaataacgtcccaatattttaatcaagtcaattatgaatcaatgaatctatataataat |
36359788 |
T |
|
| Q |
118 |
catattcaaattaattatgaccaaccttttgatgaatcttctttctttttgcagccttgcaaggatgctccaacggtatgtatacatagctctacctnnn |
217 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36359787 |
catattcaaattaattatgaccaacctttttatgaatcttctttctttttgcagccttgcaaggatgctccaacggtatgtatacatagctctacctaaa |
36359688 |
T |
|
| Q |
218 |
nnnnnttcaacaatttagtccgtttagtcaaatctcaatcgttaaatttaaattgaacattggtttaacgactatgatttgactattcagattaaattgt |
317 |
Q |
| |
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||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
36359687 |
aaaaaatcaacaatttaatatgtttagtcaaatctcaatcgttaaatttaaattgaacattggtttaacgactatgagttgactattcagattaaattgt |
36359588 |
T |
|
| Q |
318 |
tacggattttataatcaaggattttaattggatatacttgttaattaactaactttatttttataggctctaacatttgatagttgcaaggacttaatag |
417 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
36359587 |
tacggatttcataatcaaggattttaattggatatacttgttaattaactaaatttatttttgtaggctctaacatttgatagttgcaaggacttaatag |
36359488 |
T |
|
| Q |
418 |
ttgaggatttgacaatacaaaatgcacaacaaatccacgtttcattccaggattcgactaatgttaaagcttctggtctcaaagtgtcatcaccagggaa |
517 |
Q |
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||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36359487 |
ttgaggatttgacaatacaaaatgcgcaacaaattcacgtttcattccaggattcgactaatgttaaagcttctggtctcaaagtgtcatcaccagggaa |
36359388 |
T |
|
| Q |
518 |
tagtcctaacaccgacggaattcatctcac |
547 |
Q |
| |
|
||||||||||||||||||||||||| |||| |
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| T |
36359387 |
tagtcctaacaccgacggaattcatatcac |
36359358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 18 - 547
Target Start/End: Complemental strand, 36348630 - 36348078
Alignment:
| Q |
18 |
aaaactcatgcaaaaggaacaaaaagaaagtaagatatcacaaacaacgtcccaatattttaatcaagtcaattatgaatcaatgaatctatataa-taa |
116 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||| ||| |
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| T |
36348630 |
aaaactcatgcaaaaggaacaaaaataaagtaagatatcacaaataacgtcccaatgttttaatcaagtcaattatgcatcaatgaatctatataattaa |
36348531 |
T |
|
| Q |
117 |
tcatattcaaatta---attatgaccaaccttttgatgaat--cttctttctttttgcagccttgcaaggatgctccaacggtatgtatacatagctcta |
211 |
Q |
| |
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|||||||||||||| ||||||||||| ||| || | ||| ||| ||| | |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
36348530 |
tcatattcaaattaattattatgaccaatcttatgcctcttcacttttttttttcttcagccttgcaaggatgctccaacggtatgtatacatagttcta |
36348431 |
T |
|
| Q |
212 |
cctnnnnnnnnttcaacaatttagtccgtttagtcaaatctcaatcgttaaatttaaattgaacattggtttaacgactatgatttgactattcagatta |
311 |
Q |
| |
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||| || |||||||||||| ||||||||||||||| ||||| |||||||||||||||||| ||||| |||||||||||||| ||| ||| |
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| T |
36348430 |
cctacattttc-tcgacaatttagtccatttagtcaaatctcagtcgttgaatttaaattgaacattgatttaataactatgatttgactgttccaattg |
36348332 |
T |
|
| Q |
312 |
aattgt------tacgg--------attttataatcaaggattttaattggat----atacttgttaattaactaactttatttttataggctctaacat |
393 |
Q |
| |
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|||||| ||||| ||| |||||||| ||| |||||||||| |||| |||||||||||||||||| ||||| |||||||| || | |
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| T |
36348331 |
aattgtttagaatacgggcttacaactttcataatcaaagatattaattggattgaaatacgtgttaattaactaactttgtttttgtaggctctgacgt |
36348232 |
T |
|
| Q |
394 |
ttgatagttgcaaggacttaatagttgaggatttgacaatacaaaatgcacaacaaatccacgtttcattccaggattcgactaatgttaaagcttctgg |
493 |
Q |
| |
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||| || |||| ||||||| ||||||||| |||||| |||| |||||| ||||||||||| ||||||| |||||||| |||||||| ||||||||| |
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| T |
36348231 |
ttgctaattgcgaggacttgatagttgagaatttgaagatacgaaatgcgcaacaaatccatatttcatttcaggattcagttaatgttacagcttctgg |
36348132 |
T |
|
| Q |
494 |
tctcaaagtgtcatcaccagggaatagtcctaacaccgacggaattcatctcac |
547 |
Q |
| |
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||| | ||| ||||||| | | |||||||||||||||| ||||||||| |||| |
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|
| T |
36348131 |
tctgattgtggcatcaccggaggatagtcctaacaccgatggaattcatgtcac |
36348078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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