View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2814_high_9 (Length: 434)
Name: NF2814_high_9
Description: NF2814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2814_high_9 |
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| [»] scaffold0929 (2 HSPs) |
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Alignment Details
Target: scaffold0929 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: scaffold0929
Description:
Target: scaffold0929; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 202 - 424
Target Start/End: Original strand, 828 - 1050
Alignment:
| Q |
202 |
cataccacttaatatgttttcttttaatttctattatttatgtgtatgtgtcaaaataaattttatttagggttgtgtttaaacaagagttcctctattc |
301 |
Q |
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| T |
828 |
cataccacttaatatgttttcttttaatttctattatttatgtgtatgtgtcaaaataaattttatttagggttgtgtttaaacaagagtttctctattc |
927 |
T |
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| Q |
302 |
cacaagtccaattgtaatgtgtggcataacataataattgactagtttatgttgtaggtttatagcccaaaagatcaaaccattgaattcaaattatcaa |
401 |
Q |
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| T |
928 |
cacaagtccaattgtaatgtgtggcataacataataattgactagtttatgttgtaggtttatagcccaaaagatcaaaccattgaattcaaattatcaa |
1027 |
T |
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| Q |
402 |
actcattataacctatgtctgtg |
424 |
Q |
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|||||||||||||||||| |||| |
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| T |
1028 |
actcattataacctatgtgtgtg |
1050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0929; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 18 - 142
Target Start/End: Original strand, 644 - 768
Alignment:
| Q |
18 |
gtgacaaccccaccatgtttgataagttgctatataatatattggaatttttctgttctttctatttgacatattaatgtgatggattaatgcacagata |
117 |
Q |
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| T |
644 |
gtgacaaccccaccatgtttgataagttgctatataatatattggaatttttctgttctttctatttgacatattaatgtgatggattaatgcacagata |
743 |
T |
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| Q |
118 |
aataatttgttagacacaacttcag |
142 |
Q |
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| T |
744 |
aataatttgttagacacaacttcag |
768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 119; Significance: 1e-60; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 219 - 401
Target Start/End: Original strand, 6369889 - 6370071
Alignment:
| Q |
219 |
tttcttttaatttctattatttatgtgtatgtgtcaaaataaattttatttagggttgtgtttaaacaagagttcctctattccacaagtccaattgtaa |
318 |
Q |
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| T |
6369889 |
tttcttttaatttctatcatttatatgtatgtgtcaaaataaattttatttgagattgtgttcaaacaagagttcttctattgcacaagttcaattgaaa |
6369988 |
T |
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| Q |
319 |
tgtgtggcataacataataattgactagtttatgttgtaggtttatagcccaaaagatcaaaccattgaattcaaattatcaa |
401 |
Q |
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| T |
6369989 |
tgtgtggcatagcataataattgactagtttatgttttaggtctatagcacaaaagatcaaaccactgcattcaaattatcaa |
6370071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 219 - 401
Target Start/End: Original strand, 6378354 - 6378536
Alignment:
| Q |
219 |
tttcttttaatttctattatttatgtgtatgtgtcaaaataaattttatttagggttgtgtttaaacaagagttcctctattccacaagtccaattgtaa |
318 |
Q |
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| T |
6378354 |
tttcttttaatttctatcatttatatgtatgtgtcaaaataaattttatttgagattgtgttcaaacaagagttcttctattgcacaagttcaattgaaa |
6378453 |
T |
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| Q |
319 |
tgtgtggcataacataataattgactagtttatgttgtaggtttatagcccaaaagatcaaaccattgaattcaaattatcaa |
401 |
Q |
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| T |
6378454 |
tgtgtggcatagcataataattgactagtttatgttttaggtctatagcacaaaagatcaaaccactgcattcaaattatcaa |
6378536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 138
Target Start/End: Original strand, 6369708 - 6369813
Alignment:
| Q |
30 |
ccatgtttgataagttgctatataatatattggaatttttctgttctttctatttgacatattaatgtgatggattaatgcacagataaataatttgtta |
129 |
Q |
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| T |
6369708 |
ccatgtttggtagcttgctatataatat--tgggatttttattttctttctatttaacatattaatg-gatggattcttgcggggagaaatacttagtta |
6369804 |
T |
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| Q |
130 |
gacacaact |
138 |
Q |
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| T |
6369805 |
gacacaact |
6369813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 138
Target Start/End: Original strand, 6378173 - 6378278
Alignment:
| Q |
30 |
ccatgtttgataagttgctatataatatattggaatttttctgttctttctatttgacatattaatgtgatggattaatgcacagataaataatttgtta |
129 |
Q |
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| T |
6378173 |
ccatgtttggtagcttgctatataatat--tgggatttttattttctttctatttaacatattaatg-gatggattcttgcggggagaaatacttagtta |
6378269 |
T |
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| Q |
130 |
gacacaact |
138 |
Q |
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| T |
6378270 |
gacacaact |
6378278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 283
Target Start/End: Original strand, 34514802 - 34514867
Alignment:
| Q |
218 |
ttttcttttaatttctattatttatgtgtatgtgtcaaaataaattttatttagggttgtgtttaa |
283 |
Q |
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| T |
34514802 |
ttttcttttaattttttatatttatgtgtatgtccccaaataaattttatttggagttatgtttaa |
34514867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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