View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2814_low_11 (Length: 453)
Name: NF2814_low_11
Description: NF2814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2814_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 17 - 435
Target Start/End: Original strand, 31086983 - 31087410
Alignment:
| Q |
17 |
atgaagatatgcctatatataaaacaagagcccacttcttgatatacttaaacactcaaattctgtaatacggtgatatatcaccacttattgttcggtt |
116 |
Q |
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| T |
31086983 |
atgaagatatgcctatatataaaacaagagcccacttattgatatacttaaacactcaaattctgtaatacagtgatatatcactacttattgttcggtt |
31087082 |
T |
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| Q |
117 |
gtccttcttgcagattataaatggactcatttaacgagtttcgttttctaaatcacttgtaatatgcaggaatgtcattcgactaataacgggatattaa |
216 |
Q |
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| T |
31087083 |
gtccttcttgcagattataagtggactcatttaacgagtttcattttct-aatcacttgtaatatgcaggaatgtcattcgactaataacaggatattaa |
31087181 |
T |
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| Q |
217 |
aaagtacttcaaattttgttcnnnnnnnnnnnnnngtacttcaaattattagaataaatagttccnnnnnnnaagggaaaacaaatcctgcacttaattt |
316 |
Q |
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| T |
31087182 |
aaagtacttcaaattttgttcaaaaacaaaaaaaagtacttcaaattattaaaataaattgttcctttttttaagggaaaacaaatcctgcacttaatta |
31087281 |
T |
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| Q |
317 |
tggatattgatgtgttgg--------atttatttatttgtcaagtagtttgaatag--atgaagtgtttggagtttgaaccctaactcagcatatatctt |
406 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||| ||||||||||| |||||| ||||||||||| |
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| T |
31087282 |
tggatattgatgtgttggatttatttatttatttatttgtcaagtagtttgaataggtgtggagtgtttcgagtttgaaccttaactctgcatatatctt |
31087381 |
T |
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| Q |
407 |
gtaatatctctctgtggagtgttccgggt |
435 |
Q |
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| T |
31087382 |
gtaatgtctttatgtggagtgttctgggt |
31087410 |
T |
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