View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2814_low_15 (Length: 404)
Name: NF2814_low_15
Description: NF2814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2814_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 270 - 390
Target Start/End: Complemental strand, 1973756 - 1973636
Alignment:
| Q |
270 |
tgaaccattgttcgaacgactccgacccagaacactcgacaaggttgtcagacaagatcatctcttatcatcaaactcaattcttcgttaatcaattcaa |
369 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1973756 |
tgaaccattgctcgaacgactccgacccagaacactcgacaaggttgtcagacaagatcatctcttatcatcaaactcaattcttcgttaatcaattcaa |
1973657 |
T |
|
| Q |
370 |
cgcaaacgtctaccttcaatc |
390 |
Q |
| |
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||||||||||||||||||||| |
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| T |
1973656 |
cgcaaacgtctaccttcaatc |
1973636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 270 - 390
Target Start/End: Complemental strand, 10987301 - 10987181
Alignment:
| Q |
270 |
tgaaccattgttcgaacgactccgacccagaacactcgacaaggttgtcagacaagatcatctcttatcatcaaactcaattcttcgttaatcaattcaa |
369 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
10987301 |
tgaaccattgttcgaacgactccgacccagaacactcgacaaggttgtcagacaagatcatctcttattatcaaactcaattcttcgttaatcaattcaa |
10987202 |
T |
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| Q |
370 |
cgcaaacgtctaccttcaatc |
390 |
Q |
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| ||||||| ||||||||||| |
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| T |
10987201 |
cacaaacgtttaccttcaatc |
10987181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 270 - 390
Target Start/End: Complemental strand, 41867548 - 41867431
Alignment:
| Q |
270 |
tgaaccattgttcgaacgactccgacccagaacactcgacaaggttgtcagacaagatcatctcttatcatcaaactcaattcttcgttaatcaattcaa |
369 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
41867548 |
tgaaccattgttcgaacgactccgacccagaacactcgacaaggttgtcagacaagatc---tcttatcatcaaactcaattcttcgttaatcaattcaa |
41867452 |
T |
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| Q |
370 |
cgcaaacgtctaccttcaatc |
390 |
Q |
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||||||||||||||||||||| |
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| T |
41867451 |
cgcaaacgtctaccttcaatc |
41867431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 270 - 390
Target Start/End: Complemental strand, 43285607 - 43285487
Alignment:
| Q |
270 |
tgaaccattgttcgaacgactccgacccagaacactcgacaaggttgtcagacaagatcatctcttatcatcaaactcaattcttcgttaatcaattcaa |
369 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||| ||||| |||| |||||||||| |
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| T |
43285607 |
tgaaccattgtacgaacgactccgacccagaacactcgacgaggttgtcggacaagatcatctcttatcaacaaactccattctccgttcatcaattcaa |
43285508 |
T |
|
| Q |
370 |
cgcaaacgtctaccttcaatc |
390 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
43285507 |
cgcaaacgtctaccttcaatc |
43285487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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