View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2814_low_16 (Length: 374)

Name: NF2814_low_16
Description: NF2814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2814_low_16
NF2814_low_16
[»] chr4 (5 HSPs)
chr4 (1-137)||(24412691-24412829)
chr4 (164-326)||(24412529-24412692)
chr4 (1-140)||(40414387-40414541)
chr4 (324-363)||(24408882-24408921)
chr4 (1-45)||(24412908-24412952)
[»] chr5 (5 HSPs)
chr5 (50-141)||(43385415-43385506)
chr5 (235-305)||(19281575-19281645)
chr5 (235-326)||(1495134-1495224)
chr5 (244-326)||(34063648-34063729)
chr5 (81-113)||(33824111-33824143)
[»] scaffold0007 (1 HSPs)
scaffold0007 (235-319)||(198913-198996)
[»] chr8 (2 HSPs)
chr8 (141-306)||(376049-376217)
chr8 (235-323)||(411824-411911)
[»] chr3 (3 HSPs)
chr3 (236-305)||(17766084-17766153)
chr3 (236-305)||(19067404-19067473)
chr3 (235-295)||(36802486-36802546)
[»] chr1 (4 HSPs)
chr1 (244-326)||(19403538-19403619)
chr1 (235-305)||(16801500-16801572)
chr1 (8-52)||(30647520-30647564)
chr1 (1-52)||(30642696-30642747)
[»] chr6 (1 HSPs)
chr6 (1-52)||(5437856-5437907)


Alignment Details
Target: chr4 (Bit Score: 96; Significance: 5e-47; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 24412829 - 24412691
Alignment:
Q  1 gcaagcaatgtaaataagcctcctatataagacatgttgtaatcaattttcataagtttacaacaataattctctacttcttatctttctctcttttcat 100  Q
    ||||||||||| |||||||||| |||||||| || |||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  24412829 gcaagcaatgtgaataagcctcttatataaggcacgttgtaatcacttttcatcagtttacaacaataattctctacttcttctctttctctcttttcat 24412730  T
Q  101 tctctcaaaatcaacac--aagatagttactttgttcca 137  Q
    |||||||||||||||||  || |||||||||||||||||    
T  24412729 tctctcaaaatcaacacaaaatatagttactttgttcca 24412691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 164 - 326
Target Start/End: Complemental strand, 24412692 - 24412529
Alignment:
Q  164 caccacttttcaaacacagagcattagatctgtgctaaaactggaaaatctcctccttctagtgataattt-tttacactgatttttgataatacaaaca 262  Q
    |||||||||||||||||| ||||||||||||  ||||||||||||||||||| || |||||| |  ||||| |||| | ||||||||| |||||||||||    
T  24412692 caccacttttcaaacacaaagcattagatctacgctaaaactggaaaatctcatctttctagcgccaatttatttataatgatttttggtaatacaaaca 24412593  T
Q  263 atatcatccaaaaacagttaaggactgaattaaagtcctttttaaagttctttgagtttagcga 326  Q
    |||| ||| ||||| |||||||||||||||| |||||||||||  ||||||||| |||||||||    
T  24412592 atataatcaaaaaatagttaaggactgaattgaagtcctttttggagttctttgggtttagcga 24412529  T

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Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 40414541 - 40414387
Alignment:
Q  1 gcaagcaatgtaaataagcctcctatataagacatgttgtaatcaattttca-----------------taagtttacaacaataattctctacttctta 83  Q
    |||||||||||||||||||||| |||||||| ||||||||||||| ||||||                 |||||||||||||||   ||||||||||||     
T  40414541 gcaagcaatgtaaataagcctcttatataaggcatgttgtaatcacttttcactaataatgaaaactcgtaagtttacaacaat---tctctacttcttc 40414445  T
Q  84 tctttctctcttttcattctctcaaaatc-aacacaagatagttactttgttccaaca 140  Q
    ||||||||||||||||||||||||||||| ||||||| ||  ||||||| ||||||||    
T  40414444 tctttctctcttttcattctctcaaaatcaaacacaaaatttttacttttttccaaca 40414387  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 324 - 363
Target Start/End: Complemental strand, 24408921 - 24408882
Alignment:
Q  324 cgaagtgttggactcgattatttaaattgattcggttcat 363  Q
    |||||||||||||| |||||||||||||||||| ||||||    
T  24408921 cgaagtgttggacttgattatttaaattgattcagttcat 24408882  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 24412952 - 24412908
Alignment:
Q  1 gcaagcaatgtaaataagcctcctatataagacatgttgtaatca 45  Q
    ||||||||||| |||||||||| |||||||| ||||| |||||||    
T  24412952 gcaagcaatgtgaataagcctcttatataaggcatgtagtaatca 24412908  T

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Target: chr5 (Bit Score: 76; Significance: 5e-35; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 50 - 141
Target Start/End: Complemental strand, 43385506 - 43385415
Alignment:
Q  50 tcataagtttacaacaataattctctacttcttatctttctctcttttcattctctcaaaatcaacacaagatagttactttgttccaacaa 141  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||    
T  43385506 tcataagtttacaacaataattctctacttcttctctttctctcttttcattctcacaaaatcaacataaaatagttactttgttccaacaa 43385415  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 235 - 305
Target Start/End: Original strand, 19281575 - 19281645
Alignment:
Q  235 tttacactgatttttgataatacaaacaatatcatccaaaaacagttaaggactgaattaaagtccttttt 305  Q
    ||||||||| || ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  19281575 tttacactggttattggtaatacaaacaatattatccaaaaacagttaaggactgaattaaagtccttttt 19281645  T

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Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 235 - 326
Target Start/End: Complemental strand, 1495224 - 1495134
Alignment:
Q  235 tttacactgatttttgataatacaaacaatatcatccaaaaacagttaaggactgaattaaagtcctttttaaagttctttgagtttagcga 326  Q
    ||||||||||||||||| ||||||||  |||| |||||||| | |||||| || ||||||||||||||||| | ||||||||||||||||||    
T  1495224 tttacactgatttttgacaatacaaatgatattatccaaaa-ctgttaagaaccgaattaaagtcctttttgaggttctttgagtttagcga 1495134  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 244 - 326
Target Start/End: Complemental strand, 34063729 - 34063648
Alignment:
Q  244 atttttgataatacaaacaatatcatccaaaaacagttaaggactgaattaaagtcctttttaaagttctttgagtttagcga 326  Q
    ||||||| |||||||||| |||| |||||||| ||||||||| ||||||||||||| |||||   |||||||| |||||||||    
T  34063729 atttttggtaatacaaacgatattatccaaaa-cagttaagggctgaattaaagtcatttttggggttctttgggtttagcga 34063648  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 113
Target Start/End: Original strand, 33824111 - 33824143
Alignment:
Q  81 ttatctttctctcttttcattctctcaaaatca 113  Q
    |||||||||||||||||| ||||||||||||||    
T  33824111 ttatctttctctcttttctttctctcaaaatca 33824143  T

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Target: scaffold0007 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 235 - 319
Target Start/End: Complemental strand, 198996 - 198913
Alignment:
Q  235 tttacactgatttttgataatacaaacaatatcatccaaaaacagttaaggactgaattaaagtcctttttaaagttctttgagt 319  Q
    |||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||   |||||||||||    
T  198996 tttacactgatttttggtaatacaaacaatattatccaaaa-cagttaaggactgaattaaagtcctttttggggttctttgagt 198913  T

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Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 141 - 306
Target Start/End: Complemental strand, 376217 - 376049
Alignment:
Q  141 actgttagccatagagtttaaatcaccacttttcaaacacaga--gcattagatctgtgctaaaactggaaaatctcc-tccttctagtgataattt-tt 236  Q
    ||||||| ||||| || | ||||||||| |||||||||||| |  |||||||||  | ||||||||||||||||| || ||||||||  |  ||||| ||    
T  376217 actgttaaccataaagatcaaatcaccatttttcaaacacataaagcattagattcgggctaaaactggaaaatccccctccttctaacgccaatttgtt 376118  T
Q  237 tacactgatttttgataatacaaacaatatcatccaaaaacagttaaggactgaattaaagtccttttta 306  Q
    |||||| |||||||   ||||||||||||| |||||||| ||||||||||||||||||||| ||||||||    
T  376117 tacactaatttttggcgatacaaacaatattatccaaaa-cagttaaggactgaattaaagcccttttta 376049  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 323
Target Start/End: Complemental strand, 411911 - 411824
Alignment:
Q  235 tttacactgatttttgataatacaaacaatatcatccaaaaacagttaaggactgaattaaagtcctttttaaagttctttgagtttag 323  Q
    |||||| |||||||| |||||| |||| |||| |||| ||| ||  |||||| |||||||||||| ||||||  |||||||| ||||||    
T  411911 tttacattgattttttataataaaaacgatattatccgaaa-catataaggattgaattaaagtcttttttagggttctttgggtttag 411824  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 236 - 305
Target Start/End: Original strand, 17766084 - 17766153
Alignment:
Q  236 ttacactgatttttgataatacaaacaatatcatccaaaaacag-ttaaggactgaattaaagtccttttt 305  Q
    |||||| |||||||| ||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||    
T  17766084 ttacacggatttttggtaatacaaacaatattatcc-aaaacagtttaaggactgaattaaagtccttttt 17766153  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 236 - 305
Target Start/End: Original strand, 19067404 - 19067473
Alignment:
Q  236 ttacactgatttttgataatacaaacaatatcatccaaaaacag-ttaaggactgaattaaagtccttttt 305  Q
    |||||| |||||||| ||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||    
T  19067404 ttacacggatttttggtaatacaaacaatattatcc-aaaacagtttaaggactgaattaaagtccttttt 19067473  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 295
Target Start/End: Complemental strand, 36802546 - 36802486
Alignment:
Q  235 tttacactgatttttgataatacaaacaatatcatccaaaaacagttaaggactgaattaa 295  Q
    |||||||| ||||||| ||||||||||||||| ||  |||||||||||| || ||||||||    
T  36802546 tttacactaatttttggtaatacaaacaatattatttaaaaacagttaacgattgaattaa 36802486  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 244 - 326
Target Start/End: Original strand, 19403538 - 19403619
Alignment:
Q  244 atttttgataatacaaacaatatcatccaaaaacagttaaggactgaattaaagtcctttttaaagttctttgagtttagcga 326  Q
    ||||||| |||||||||| |||| |||||||| ||||||||| ||||||||||||| |||||   |||||||| |||||||||    
T  19403538 atttttggtaatacaaacgatattatccaaaa-cagttaagggctgaattaaagtcatttttggggttctttgggtttagcga 19403619  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 305
Target Start/End: Original strand, 16801500 - 16801572
Alignment:
Q  235 tttacactgatttttgataatacaaacaatatcatccaaaaaca--gttaaggactgaattaaagtccttttt 305  Q
    |||||||||||||||  ||||||||||||||| |||| || | |  |||||||||||||||||||||||||||    
T  16801500 tttacactgatttttagtaatacaaacaatattatccgaatatatagttaaggactgaattaaagtccttttt 16801572  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 30647520 - 30647564
Alignment:
Q  8 atgtaaataagcctcctatataagacatgttgtaatcaattttca 52  Q
    ||||||||||||||| |||||||| ||||||||||||| ||||||    
T  30647520 atgtaaataagcctcttatataaggcatgttgtaatcacttttca 30647564  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 30642696 - 30642747
Alignment:
Q  1 gcaagcaatgtaaataagcctcctatataagacatgttgtaatcaattttca 52  Q
    |||||||| ||||||||||||| |||||||| |||| |||||||| ||||||    
T  30642696 gcaagcaaggtaaataagcctcttatataaggcatgctgtaatcacttttca 30642747  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 5437856 - 5437907
Alignment:
Q  1 gcaagcaatgtaaataagcctcctatataagacatgttgtaatcaattttca 52  Q
    ||||||||||| |||||||||| |||||||| ||||||||||||| ||||||    
T  5437856 gcaagcaatgtgaataagcctcttatataaggcatgttgtaatcatttttca 5437907  T

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