View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2814_low_2 (Length: 664)
Name: NF2814_low_2
Description: NF2814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2814_low_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 568; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 568; E-Value: 0
Query Start/End: Original strand, 1 - 658
Target Start/End: Complemental strand, 5921367 - 5920711
Alignment:
| Q |
1 |
acatagaccaattccatcttgtatttgtgttcatgcttgccattgtgatgctactagggttgctaagatttacagaactgaggatcaaatcatgcagttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5921367 |
acatagaccaattccatcttgtatttgtgttcatgcttgccgttgtgatgctactagggttgctaagatttacagaactgaggatcaaatcatgcagttt |
5921268 |
T |
|
| Q |
101 |
ttgactagtttgaatgataattttggggttgttaagactcaagttcttcttcttgatcctcttcctcctctcaagaaggtttactctcttgtggtgcaag |
200 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
5921267 |
ttgactggtttgaatgataattttggggttgttaagactcaagttcttcttcttgatcctcttcctccgctcaagaaggtttactctcttgtggtgcaag |
5921168 |
T |
|
| Q |
201 |
aagaaagcaataattctttaccaatttcagtctctgcttcagatgatagtaacatacaattgaatgcttctgaggttaagaaatcacaaggacgtggtaa |
300 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
5921167 |
aagaaaacaataattctttaccaatttcagtcactgcttcagatgatagtaacatacaattgaatgcttatgaggttaagaaatcacaaggacgtggtaa |
5921068 |
T |
|
| Q |
301 |
aggttctcttttgttcattctcaaaaacctactaggtattgcaccttttgtcacaagactaatcacacagttgatttttgttatcaaaaacatggccacc |
400 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |
|
|
| T |
5921067 |
aggt--tcttttgttcattctcaaaaacctactacgtattgcaccttttgtcacaagactaatcacacaattgatttttgttatcaaaaacatggctacc |
5920970 |
T |
|
| Q |
401 |
ctagttttcctaagcaacaatctagagtaaatgcagctactcatgagatccttgatgaaaatggtgcattggatcatggtttggggggctctacaggttc |
500 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5920969 |
ctagttttcctaagcaacaatcaagaggaaatgcagctactcatgagatccttgatgaaaatggtgcattggatcatggtttggggggctctacaggttc |
5920870 |
T |
|
| Q |
501 |
tggtacttgtttgtctccagagcaatatactcaacttgtttcc-ttgctacaacatgctagtttggtttcctcatcatctctcccttctacttcaaatgc |
599 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
5920869 |
tggtacctgtttgtctccagagcaatatactcaacttgtttcctttgctacaacaggcaagtttggtttcctcatcatctctcccttctacttcaaattc |
5920770 |
T |
|
| Q |
600 |
caccaccaaccatgtccaagtcactccttttgtttctattagcatctctgctcctcctc |
658 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
5920769 |
caccaccaaccatatccaagtcactccttttgtttctactagcatctctgctactcctc |
5920711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 509 - 566
Target Start/End: Original strand, 26968721 - 26968778
Alignment:
| Q |
509 |
gtttgtctccagagcaatatactcaacttgtttccttgctacaacatgctagtttggt |
566 |
Q |
| |
|
|||| |||| |||||||||| ||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
26968721 |
gtttatctcaagagcaatatgctcaactagtttccttgctacaacaggctagtttggt |
26968778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 166
Target Start/End: Original strand, 14813484 - 14813625
Alignment:
| Q |
25 |
ttgtgttcatgcttgccattgtgatgctactagggttgctaagatttacagaactgaggatcaaatcatgcagtttttgactagtttgaatgataatttt |
124 |
Q |
| |
|
|||||||||| |||| | ||||| ||| ||| |||||||||||| | |||| ||||||||| || ||||| ||| | || | ||||||||| | ||| |
|
|
| T |
14813484 |
ttgtgttcatccttgtcgttgtgctgcatctaaagttgctaagattcatagaaatgaggatcagattatgcaatttcttacaggattgaatgatcaattt |
14813583 |
T |
|
| Q |
125 |
ggggttgttaagactcaagttcttcttcttgatcctcttcct |
166 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
14813584 |
tctgttgttagaactcaagttcttctccttgatcctcttcct |
14813625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 340 - 395
Target Start/End: Original strand, 17118914 - 17118969
Alignment:
| Q |
340 |
tgcaccttttgtcacaagactaatcacacagttgatttttgttatcaaaaacatgg |
395 |
Q |
| |
|
||||| |||| | |||||| |||||| || |||||||||||||||||||||||||| |
|
|
| T |
17118914 |
tgcacattttttaacaagaataatcatactgttgatttttgttatcaaaaacatgg |
17118969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 128 - 214
Target Start/End: Original strand, 6340973 - 6341059
Alignment:
| Q |
128 |
gttgttaagactcaagttcttcttcttgatcctcttcctcctctcaagaaggtttactctcttgtggtgcaagaagaaagcaataat |
214 |
Q |
| |
|
||||| |||||||||||||||||| | ||||| |||||| | |||| |||||||| ||| | || || ||||||||||| |||||| |
|
|
| T |
6340973 |
gttgtgaagactcaagttcttcttatggatccacttccttcaatcaacaaggtttattctatggttgttcaagaagaaagtaataat |
6341059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 433; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 1 - 659
Target Start/End: Complemental strand, 20325669 - 20325019
Alignment:
| Q |
1 |
acatagaccaattccatcttgtatttgtgttcatgcttgccattgtgatgctactagggttgctaagatttacagaactgaggatcaaatcatgcagttt |
100 |
Q |
| |
|
||||||||| |||||||||||| | |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
20325669 |
acatagacctattccatcttgtgtgtgtgttcatgcttgccgttgtgatgctactagggtggctaagatttacagaactgaggatcaaattatgcagttt |
20325570 |
T |
|
| Q |
101 |
ttgactagtttgaatgataattttggggttgttaagactcaagttcttcttcttgatcctcttcctcctctcaagaaggtttactctcttgtggtgcaag |
200 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||| || || ||||| |||||||||||||||| |
|
|
| T |
20325569 |
ttgactggtttgaatgataattttggagttgttaagactcaagttcttcttcttaatcctcttccacctcttaataaagtttattctcttgtggtgcaag |
20325470 |
T |
|
| Q |
201 |
aagaaagcaataattctttaccaatttcagtctctgcttcagatgatagtaacatacaattgaatgcttctgaggttaagaaatcacaaggacgtggtaa |
300 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
20325469 |
aagaaagcaataactctttaccaatttcaatctctgcttcagatgatagtaacatacaattgaatgcttctgaggttaagaaatcccaaggacgtggtaa |
20325370 |
T |
|
| Q |
301 |
aggttctcttttgttcattctcaaaaacctactaggtattgcaccttttgtcacaagactaatcacacagttgatttttgttatcaaaaacatggccacc |
400 |
Q |
| |
|
||| ||||||| ||||||||||||||| |||||| ||||| ||||||||||| |||||||||||||||||||||||||||||| |||||| || | |
|
|
| T |
20325369 |
agg-----ttttgttaattctcaaaaacctaataggtactgcactttttgtcacaaaactaatcacacagttgatttttgttatcaactacatggtcatc |
20325275 |
T |
|
| Q |
401 |
ctagttttcctaagcaacaatctagagtaaatgcagctactcatgagatccttgatgaaaatggtgcattggatcatggtttggggggctctacaggttc |
500 |
Q |
| |
|
|||||||||||||||||||||||| ||| | | ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20325274 |
ctagttttcctaagcaacaatctaaagtga---ctgcttctcatgagatccctgatgaaaatggtgcattggatcatggtttggggggctctacaggttc |
20325178 |
T |
|
| Q |
501 |
tggtacttgtttgtctccagagcaatatactcaacttgtttccttgctacaacatgctagtttggtttcctcatcatctctcccttctacttcaaatgcc |
600 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||| || || ||||||||| ||||||||||||||| ||| ||||||||||||| |
|
|
| T |
20325177 |
tggtactagtttgtctccagagcaatatactcaacttgtttccttgctgcagcaggctagtttgatttcctcatcatctcctcctcctacttcaaatgct |
20325078 |
T |
|
| Q |
601 |
accaccaaccatgtccaagtcactccttttgtttctattagcatctctgctcctcctca |
659 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||| | || ||| |||||| ||||||| |
|
|
| T |
20325077 |
accaccaatcatgtccaaaccactccttttgtttccaataacatttctgcttctcctca |
20325019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 59 - 218
Target Start/End: Original strand, 11922982 - 11923141
Alignment:
| Q |
59 |
gttgctaagatttacagaactgaggatcaaatcatgcagtttttgactagtttgaatgataattttggggttgttaagactcaagttcttcttcttgatc |
158 |
Q |
| |
|
||||| |||||||||| |||| | |||||||||||||| ||| |||| | ||||||||| | ||| || | || ||||||||| | |||||||||| |
|
|
| T |
11922982 |
gttgccaagatttacataactaaagatcaaatcatgcaatttctgacaggcttgaatgatcaattttctgtattaaaaactcaagttttgcttcttgatc |
11923081 |
T |
|
| Q |
159 |
ctcttcctcctctcaagaaggtttactctcttgtggtgcaagaagaaagcaataattctt |
218 |
Q |
| |
|
|| ||||| | || || |||||||||| ||||| || |||||||||||||||| |||| |
|
|
| T |
11923082 |
ctattccttccctgaacaaggtttacttccttgttgtttaagaagaaagcaataactctt |
11923141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 128 - 214
Target Start/End: Complemental strand, 16992354 - 16992268
Alignment:
| Q |
128 |
gttgttaagactcaagttcttcttcttgatcctcttcctcctctcaagaaggtttactctcttgtggtgcaagaagaaagcaataat |
214 |
Q |
| |
|
||||| |||||||||||||||||| | ||||| |||||| | |||| |||||||| ||| | || || ||||||||||| |||||| |
|
|
| T |
16992354 |
gttgtgaagactcaagttcttcttatggatccacttccttcaatcaacaaggtttattctatggttgttcaagaagaaagtaataat |
16992268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 60 - 117
Target Start/End: Original strand, 25571626 - 25571683
Alignment:
| Q |
60 |
ttgctaagatttacagaactgaggatcaaatcatgcagtttttgactagtttgaatga |
117 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
25571626 |
ttgctaagctttacagaaccaaggatcaaatcattcagtttttgactggtttgaatga |
25571683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 218
Target Start/End: Original strand, 22642017 - 22642215
Alignment:
| Q |
20 |
tgtatttgtgttcatgcttgccattgtgatgctactagggttgctaagatttacagaactgaggatcaaatcatgcagtttttgactagtttgaatgata |
119 |
Q |
| |
|
||||||||||| ||| | |||| ||||| |||||| | ||||| |||| | | ||||||||||||||||| ||||| ||||| ||| | ||||||||| |
|
|
| T |
22642017 |
tgtatttgtgtgcatccatgccggtgtgaagctactcgtgttgccaagactcatagaactgaggatcaaataatgcaatttttaactggcttgaatgatc |
22642116 |
T |
|
| Q |
120 |
attttggggttgttaagactcaagttcttcttcttgatcctcttcctcctctcaagaaggtttactctcttgtggtgcaagaagaaagcaataattctt |
218 |
Q |
| |
|
| || || || |||||||| |||| | ||||||||||| ||| || | || |||||||| ||| | ||| | |||||||| ||||||||||||| |
|
|
| T |
22642117 |
aattctctgtggtaaagactcagattctattgcttgatcctctaccttctttgaataaggtttattctatggtgattcaagaagagagcaataattctt |
22642215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 166
Target Start/End: Original strand, 5238026 - 5238167
Alignment:
| Q |
25 |
ttgtgttcatgcttgccattgtgatgctactagggttgctaagatttacagaactgaggatcaaatcatgcagtttttgactagtttgaatgataatttt |
124 |
Q |
| |
|
|||||||||| |||| | ||||| ||| ||| |||||||||||| | |||| ||||||||| || ||||| ||| | || | ||||||||| | ||| |
|
|
| T |
5238026 |
ttgtgttcatccttgtcgttgtgctgcatctaaagttgctaagattcatagaaatgaggatcagattatgcaatttcttacaggattgaatgatcaattt |
5238125 |
T |
|
| Q |
125 |
ggggttgttaagactcaagttcttcttcttgatcctcttcct |
166 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
5238126 |
tctgttgttagaactcaagttcttctccttgatcctcttcct |
5238167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 128 - 214
Target Start/End: Complemental strand, 20485189 - 20485103
Alignment:
| Q |
128 |
gttgttaagactcaagttcttcttcttgatcctcttcctcctctcaagaaggtttactctcttgtggtgcaagaagaaagcaataat |
214 |
Q |
| |
|
||||| |||||||||||||||||| | ||||| |||||| | |||| |||||||| ||| | || || ||||||||||| |||||| |
|
|
| T |
20485189 |
gttgtgaagactcaagttcttcttatggatccacttccttcaatcaacaaggtttattctatggttgttcaagaagaaagtaataat |
20485103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 128 - 214
Target Start/End: Original strand, 28016002 - 28016088
Alignment:
| Q |
128 |
gttgttaagactcaagttcttcttcttgatcctcttcctcctctcaagaaggtttactctcttgtggtgcaagaagaaagcaataat |
214 |
Q |
| |
|
||||| |||||||||||||||||| | ||||| |||||| | |||| |||||||| ||| | || || ||||||||||| |||||| |
|
|
| T |
28016002 |
gttgtgaagactcaagttcttcttatggatccacttccttcaatcaacaaggtttattctatggttgttcaagaagaaagtaataat |
28016088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 395
Target Start/End: Original strand, 15756210 - 15756259
Alignment:
| Q |
346 |
ttttgtcacaagactaatcacacagttgatttttgttatcaaaaacatgg |
395 |
Q |
| |
|
||||||||||||||||||||||| | || ||||| |||||||||||||| |
|
|
| T |
15756210 |
ttttgtcacaagactaatcacactttggaattttgctatcaaaaacatgg |
15756259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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