View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2814_low_20 (Length: 314)
Name: NF2814_low_20
Description: NF2814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2814_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 136; Significance: 6e-71; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 16 - 176
Target Start/End: Complemental strand, 2582438 - 2582276
Alignment:
| Q |
16 |
cttggaatacaaaa--tcgagattaactgtatgcacatagagagggtattttaagtatattaatgcataaaatagacacattaactctgctattaatttt |
113 |
Q |
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| T |
2582438 |
cttggaatacaaaaaatcgagattaactgtatgcacatagagagggtattttaagtatattaatgcataaaatagatacattaactctgctattaatttt |
2582339 |
T |
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| Q |
114 |
tctgaataagaatgaaattcgcaatagatgcttatatttatggacaaatatattttaaaccaa |
176 |
Q |
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| T |
2582338 |
tctgaataagaatgaaattcagaatagatgcttatatttatggacaaatatattataaaccaa |
2582276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 217 - 281
Target Start/End: Complemental strand, 2582282 - 2582218
Alignment:
| Q |
217 |
aaaccaacaccaccaaaccagccaaagtgaatttcaatcggtccctttttacgaaaccaattacc |
281 |
Q |
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| T |
2582282 |
aaaccaacaccttcaaaccagccaaagtgaatttcaatccgtccctttttactaaaccaattacc |
2582218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 45192541 - 45192599
Alignment:
| Q |
56 |
agggtattttaagtatattaatgcataaaatagacacattaactctgctattaattttt |
114 |
Q |
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| T |
45192541 |
agggtattttaggtatatttatacataaaatagacacattaattatactatcaattttt |
45192599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 252
Target Start/End: Complemental strand, 35053318 - 35053277
Alignment:
| Q |
210 |
agatctcaaaccaacaccaccaaaccagccaaagtgaatttca |
252 |
Q |
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| T |
35053318 |
agatctcaaaccaacaccaccaaacca-cccaagtgaatttca |
35053277 |
T |
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