View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2814_low_23 (Length: 281)
Name: NF2814_low_23
Description: NF2814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2814_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 18 - 267
Target Start/End: Complemental strand, 5921588 - 5921339
Alignment:
| Q |
18 |
caatcttggctcatcaatttcgtttcagattctattgctcaaattgttgtcttctttgtcattgcatatgaggtatggcaagatctccatgaaagtttct |
117 |
Q |
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| T |
5921588 |
caatcttggctcatcaattccgtttcaaattctattgctcaaactgttgtcttctatgtcattgcttatgaggtatggcaagatctccatgaacgtatct |
5921489 |
T |
|
| Q |
118 |
ctaaggttgatcgcattcgtattacaaatttgcgttcttctattaacaatttgaaacaaggtgcaaaatatgttcttgagtattttactgaattgaaagc |
217 |
Q |
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||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5921488 |
ctaaggttgatcgcatttgtattgcaaatttgcgttcttctattaacaatttgaaacaaggtgcaaaatatgttcttgagtattttactgaattgaaagc |
5921389 |
T |
|
| Q |
218 |
gttatgggaagaactttcaccacatagaccaattccatcttgtatctgtg |
267 |
Q |
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| T |
5921388 |
gttatgggaagaactttcatcacatagaccaattccatcttgtatttgtg |
5921339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 151; Significance: 6e-80; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 18 - 260
Target Start/End: Complemental strand, 20325890 - 20325648
Alignment:
| Q |
18 |
caatcttggctcatcaatttcgtttcagattctattgctcaaattgttgtcttctttgtcattgcatatgaggtatggcaagatctccatgaaagtttct |
117 |
Q |
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| T |
20325890 |
caatcttggataatcaattctgtttcagattctattgctcaaactgttgtcttttatgacactgcttatgaggtatggcaagatcttcatgaacgttttt |
20325791 |
T |
|
| Q |
118 |
ctaaggttgatcgcattcgtattacaaatttgcgttcttctattaacaatttgaaacaaggtgcaaaatatgttcttgagtattttactgaattgaaagc |
217 |
Q |
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| T |
20325790 |
ctaaggctgatcgtattcgtattgcaaatttgcgttcttccattaacaacttgaaacaaggtgcaaaatctgttcttgagtattttactgaattgaaatc |
20325691 |
T |
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| Q |
218 |
gttatgggaagaactttcaccacatagaccaattccatcttgt |
260 |
Q |
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| T |
20325690 |
tttatgggaagaactttcatcacatagacctattccatcttgt |
20325648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 86 - 233
Target Start/End: Original strand, 15447253 - 15447400
Alignment:
| Q |
86 |
tgaggtatggcaagatctccatgaaagtttctctaaggttgatcgcattcgtattacaaatttgcgttcttctattaacaatttgaaacaaggtgcaaaa |
185 |
Q |
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|||||| ||||||||||| | || |||| || || |||||||| ||| | ||| |||||| ||||| || ||||||||| | ||||||||| ||| | |
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| T |
15447253 |
tgaggtttggcaagatcttaaggagcgtttttcaaaagttgatcgtattagaattgaaaatttacgttcctccattaacaatctcaaacaaggttcaata |
15447352 |
T |
|
| Q |
186 |
tatgttcttgagtattttactgaattgaaagcgttatgggaagaactt |
233 |
Q |
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| |||| | |||||||| ||||| |||||||| ||||||||||||||| |
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| T |
15447353 |
tttgttttggagtatttcactgagttgaaagctttatgggaagaactt |
15447400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 196
Target Start/End: Original strand, 26470445 - 26470493
Alignment:
| Q |
148 |
tgcgttcttctattaacaatttgaaacaaggtgcaaaatatgttcttga |
196 |
Q |
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| T |
26470445 |
tgcgttcttccattaacaatctgaaacaaggtgataaatctgttcttga |
26470493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 234
Target Start/End: Complemental strand, 34893243 - 34893126
Alignment:
| Q |
117 |
tctaaggttgatcgcattcgtattacaaatttgcgttcttctattaacaatttgaaacaaggtgcaaaatatgttcttgagtattttactgaattgaaag |
216 |
Q |
| |
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||||| |||||||| ||||| ||| ||||| | ||||| || |||||||| | || |||||| | |||| ||| | |||||||||||||||||||||| |
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| T |
34893243 |
tctaaagttgatcgtattcgcattgcaaatctacgttcctccattaacaacctcaagcaaggttccaaatctgtcttagagtattttactgaattgaaag |
34893144 |
T |
|
| Q |
217 |
cgttatgggaagaacttt |
234 |
Q |
| |
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| | ||||||||||||| |
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| T |
34893143 |
ctctttgggaagaacttt |
34893126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 196
Target Start/End: Original strand, 13129139 - 13129185
Alignment:
| Q |
150 |
cgttcttctattaacaatttgaaacaaggtgcaaaatatgttcttga |
196 |
Q |
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| T |
13129139 |
cgttcttccattaacaatttgaaacaaggtgataaatctgttcttga |
13129185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 186
Target Start/End: Complemental strand, 49728251 - 49728189
Alignment:
| Q |
124 |
ttgatcgcattcgtattacaaatttgcgttcttctattaacaatttgaaacaaggtgcaaaat |
186 |
Q |
| |
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||||||||||||| ||| ||||| |||||||||| || |||||| | ||||| |||||||||| |
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| T |
49728251 |
ttgatcgcattcgcattgcaaatatgcgttcttcaatcaacaatctcaaacagggtgcaaaat |
49728189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 230
Target Start/End: Original strand, 25226927 - 25227044
Alignment:
| Q |
114 |
ttctctaaggttgatcgcattcgta-ttacaaatttgcgttcttctattaacaatttgaaacaaggtgcaaaatatgttcttgagtattttactgaattg |
212 |
Q |
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||||||||| |||||||| || | | || ||||| |||||||||| |||||||| | | ||||||| | |||||||| | |||||||| | |||| || |
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| T |
25226927 |
ttctctaagattgatcgccttagaaattgcaaatatgcgttcttcctttaacaatcttagacaaggtaccaaatatgtgttagagtatttcattgaaatg |
25227026 |
T |
|
| Q |
213 |
aaagcgttatgggaagaa |
230 |
Q |
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||||| |||||||||||| |
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| T |
25227027 |
aaagctttatgggaagaa |
25227044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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