View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2814_low_24 (Length: 281)
Name: NF2814_low_24
Description: NF2814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2814_low_24 |
 | |
|
| [»] chr6 (3 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 12 - 281
Target Start/End: Complemental strand, 24189971 - 24189703
Alignment:
| Q |
12 |
tcatcatctggcatatcaaattatgcaaacccatatttattaaattcaagacatgtatacttccaaaatttaccctaaaaacatactcatataggataaa |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24189971 |
tcatcatctggcatatcaaattatgcaaacccatatttattaaattcaagacatgtatacttccaaaatttaccctaaaaacatactcatataggataaa |
24189872 |
T |
|
| Q |
112 |
gatcactcatattacatttattaaactaaaataaaacataaacataccaacttgtacgttctagctacaaaataacttatcacaattatgaatttgttat |
211 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||| |
|
|
| T |
24189871 |
gatcactcatattatatttattaaactaaaataaaacataaacataccaacttgtacgttctagctac-aaataatttatcacaactatgaatttgttat |
24189773 |
T |
|
| Q |
212 |
tatcataacaatatcattacaacaataatcaataatcatcatttaaaattggagacttttttgacaaaat |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||| ||||| |
|
|
| T |
24189772 |
tatcataacaatatcattacaacaataatcaataatcatcatttagaattggacactttgttgataaaat |
24189703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 50 - 147
Target Start/End: Complemental strand, 24180065 - 24179968
Alignment:
| Q |
50 |
attaaattcaagaca-tgtatacttccaaaatttaccctaaaaacatactcatataggataaagatcactcatattacatttattaaactaaaataaaa |
147 |
Q |
| |
|
||||||||||||||| |||||| ||||||| |||||||||| |||||||||||| | | |||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
24180065 |
attaaattcaagacaatgtataattccaaagtttaccctaacaacatactcatag-gtacgaagatcactcatattatatttattaaactaaaataaaa |
24179968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 213 - 281
Target Start/End: Complemental strand, 24179965 - 24179897
Alignment:
| Q |
213 |
atcataacaatatcattacaacaataatcaataatcatcatttaaaattggagacttttttgacaaaat |
281 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |||||||||| ||||||| ||||| |||| ||||| |
|
|
| T |
24179965 |
atcataacagtatcattacaacaataatcaatagtcatcatttagaattggacactttgttgataaaat |
24179897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University