View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2814_low_3 (Length: 623)

Name: NF2814_low_3
Description: NF2814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2814_low_3
NF2814_low_3
[»] chr3 (8 HSPs)
chr3 (11-618)||(5306839-5307455)
chr3 (528-600)||(18364204-18364275)
chr3 (544-598)||(15282643-15282697)
chr3 (528-598)||(32221474-32221544)
chr3 (560-601)||(30818031-30818072)
chr3 (540-596)||(37330975-37331031)
chr3 (528-598)||(31280191-31280261)
chr3 (528-600)||(47783114-47783186)
[»] chr5 (5 HSPs)
chr5 (18-188)||(29144830-29145000)
chr5 (18-188)||(29226973-29227143)
chr5 (540-597)||(25467111-25467168)
chr5 (530-597)||(12619657-12619724)
chr5 (508-598)||(33669931-33670023)
[»] chr4 (4 HSPs)
chr4 (508-598)||(30848594-30848688)
chr4 (527-596)||(24980631-24980700)
chr4 (527-598)||(4423184-4423255)
chr4 (528-597)||(54235227-54235296)
[»] chr1 (3 HSPs)
chr1 (534-598)||(31784777-31784841)
chr1 (527-600)||(3693989-3694062)
chr1 (558-598)||(37918918-37918958)
[»] chr7 (2 HSPs)
chr7 (528-598)||(18731994-18732064)
chr7 (557-597)||(3719942-3719982)
[»] chr6 (3 HSPs)
chr6 (528-598)||(31323850-31323920)
chr6 (528-597)||(33822324-33822393)
chr6 (558-600)||(14222859-14222901)
[»] chr2 (8 HSPs)
chr2 (528-598)||(16180439-16180509)
chr2 (508-598)||(25089919-25090010)
chr2 (528-598)||(10459302-10459372)
chr2 (527-597)||(11386344-11386414)
chr2 (528-598)||(29291068-29291138)
chr2 (528-598)||(38935367-38935437)
chr2 (541-585)||(5713242-5713286)
chr2 (562-598)||(42266029-42266065)
[»] scaffold0067 (1 HSPs)
scaffold0067 (528-598)||(35976-36046)
[»] chr8 (5 HSPs)
chr8 (528-585)||(8777805-8777862)
chr8 (528-576)||(13210000-13210048)
chr8 (558-598)||(32729729-32729769)
chr8 (528-596)||(33557781-33557849)
chr8 (528-586)||(43295221-43295276)


Alignment Details
Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 11 - 618
Target Start/End: Original strand, 5306839 - 5307455
Alignment:
Q  11 cacagacagcagcaacaatgtgtcgatatgcaatgagtgcaaaaatgaaagttccttgaaccaagatgacccttgataaaagttgtatcccagttccaaa 110  Q
    |||| |||||||||||||| |||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  5306839 cacaaacagcagcaacaatttgtcgatatgcattgagtgcaaaaatgaaagtgccctgaaccaagatgacccttgataaaagttgtatcccagttccaaa 5306938  T
Q  111 tatttgcactaataacatgctaagaagagcttgggaagagataaaccattctttcatactttgagttttctctgtgttactcatatttgtc-aaagnnnn 209  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||        
T  5306939 tatttgcactaataacatgctaagaagagcttgggaagagatgaaccattctttcatactttgagttctctctgtgttactcatatttgtctaaagaaaa 5307038  T
Q  210 nnn-tatatatgtgaacaaacaaacaattggtgttaaatagagtgacaaaaa---catgtgctgtgctcaaatcatatacaattggtgttaaataaaaga 305  Q
        | |||||| |||||||||||||||||||||||||||||||||||||||   |||||||||||||||| |||||||||||||||||||||| |||||    
T  5307039 aaaatgtatatgagaacaaacaaacaattggtgttaaatagagtgacaaaaataacatgtgctgtgctcaactcatatacaattggtgttaaatcaaaga 5307138  T
Q  306 gacaaaaaatacttatgaaagagggtaggggaaaggaaaatgtaaaatttagttg---tggtggtctaatttgcctcgg-atttgaatagatagtaaaac 401  Q
    |||||||||||||||||||||||| |||||||||||||||| ||| |||||||||   ||||||| ||||||||||||| |||||||||| |||||||||    
T  5307139 gacaaaaaatacttatgaaagagg-taggggaaaggaaaatataagatttagttgaggtggtggtgtaatttgcctcggtatttgaataggtagtaaaac 5307237  T
Q  402 aaaaagtcaatagtaggagtaaatgctgaaaaatattccattttatttttataagttatattttgacttcctctnnnnnnnnnngttgttttctttgact 501  Q
    ||||||||||||||| || ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||           |||||||||||||||    
T  5307238 aaaaagtcaatagtatgaataaatgctgaaaaatattccattttctttttataagttgtattttgacttcctctaaaaaaaa---ttgttttctttgact 5307334  T
Q  502 accagtagcaaaaattggt--aaaaatattaatatattttgttcaaaatttgtatttgatacatcaatttatgttgatccatttttgtttacattttgga 599  Q
    || ||||||||||||||||  | ||| ||||||  |||| ||| |||||||||||| ||||||||||  ||||| |||||||||||||||||||||||||    
T  5307335 acgagtagcaaaaattggtcaataaaaattaatggatttcgtttaaaatttgtattagatacatcaacgtatgtagatccatttttgtttacattttgga 5307434  T
Q  600 --ataaagagtatatactact 618  Q
      | |||||||||||||||||    
T  5307435 acagaaagagtatatactact 5307455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 528 - 600
Target Start/End: Original strand, 18364204 - 18364275
Alignment:
Q  528 ttaatatattttgttcaaaatttgtatttgatacatcaatttatgttgatccatttttgtttacattttggaa 600  Q
    ||||| ||||||||||||||||||| |  |||||||||| ||||||| | ||||||||| |||||||||||||    
T  18364204 ttaatgtattttgttcaaaatttgtgtcagatacatcaacttatgtt-aaccatttttgcttacattttggaa 18364275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 544 - 598
Target Start/End: Complemental strand, 15282697 - 15282643
Alignment:
Q  544 aaaatttgtatttgatacatcaatttatgttgatccatttttgtttacattttgg 598  Q
    |||||||||||  ||| |||||| ||||||||||||||||||||||| |||||||    
T  15282697 aaaatttgtatcagattcatcaacttatgttgatccatttttgtttatattttgg 15282643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 528 - 598
Target Start/End: Complemental strand, 32221544 - 32221474
Alignment:
Q  528 ttaatatattttgttcaaaatttgtatttgatacatcaatttatgttgatccatttttgtttacattttgg 598  Q
    ||||| ||||| ||||||||||||||    ||||||||||||||| ||||| ||||||| |||||||||||    
T  32221544 ttaatgtatttggttcaaaatttgtaccaaatacatcaatttatgctgatcaatttttgcttacattttgg 32221474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 560 - 601
Target Start/End: Original strand, 30818031 - 30818072
Alignment:
Q  560 acatcaatttatgttgatccatttttgtttacattttggaat 601  Q
    ||||||| ||||||||||||||||||||||| ||||||||||    
T  30818031 acatcaacttatgttgatccatttttgtttatattttggaat 30818072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 540 - 596
Target Start/End: Original strand, 37330975 - 37331031
Alignment:
Q  540 gttcaaaatttgtatttgatacatcaatttatgttgatccatttttgtttacatttt 596  Q
    |||||||||||||| | ||||| |||||||||||| | ||||||||| |||||||||    
T  37330975 gttcaaaatttgtactagatacgtcaatttatgttaacccatttttgcttacatttt 37331031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 528 - 598
Target Start/End: Original strand, 31280191 - 31280261
Alignment:
Q  528 ttaatatattttgttcaaaatttgtatttgatacatcaatttatgttgatccatttttgtttacattttgg 598  Q
    ||||| ||||| ||||||||||||||    |||||| |||||||||||||||||||||  |||| ||||||    
T  31280191 ttaatgtatttggttcaaaatttgtaccatatacattaatttatgttgatccatttttccttaccttttgg 31280261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 528 - 600
Target Start/End: Original strand, 47783114 - 47783186
Alignment:
Q  528 ttaatatattttgttcaaaatttgtatttgatacatcaatttatgttgatccatttttgtttacattttggaa 600  Q
    ||||| ||||| |||||||||||||||  ||||||||   |||||||||  |||||||| ||| |||||||||    
T  47783114 ttaatgtatttggttcaaaatttgtatcagatacatcggcttatgttgactcatttttgcttatattttggaa 47783186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 9e-44; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 18 - 188
Target Start/End: Complemental strand, 29145000 - 29144830
Alignment:
Q  18 agcagcaacaatgtgtcgatatgcaatgagtgcaaaaatgaaagttccttgaaccaagatgacccttgataaaagttgtatcccagttccaaatatttgc 117  Q
    |||||||||||| |||||||| |||||||||||||||||| |||| ||||||||||| ||||| ||||||| |||||| ||||||||| |||||||||||    
T  29145000 agcagcaacaatatgtcgataagcaatgagtgcaaaaatgtaagtcccttgaaccaaaatgactcttgatagaagttgcatcccagttgcaaatatttgc 29144901  T
Q  118 actaataacatgctaagaagagcttgggaagagataaaccattctttcatactttgagttttctctgtgtt 188  Q
    ||||||||||| |||||||| ||||| || ||  | |||||||| |||||||||| | || ||||||||||    
T  29144900 actaataacatactaagaagtgcttgtgatgatttgaaccattccttcatactttcaattctctctgtgtt 29144830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 18 - 188
Target Start/End: Original strand, 29226973 - 29227143
Alignment:
Q  18 agcagcaacaatgtgtcgatatgcaatgagtgcaaaaatgaaagttccttgaaccaagatgacccttgataaaagttgtatcccagttccaaatatttgc 117  Q
    |||||||||||| |||||||| |||||||||||||||||| |||| ||||||||||| ||||| ||||||| |||||| ||||||||| |||||||||||    
T  29226973 agcagcaacaatatgtcgataagcaatgagtgcaaaaatgtaagtcccttgaaccaaaatgactcttgatagaagttgcatcccagttgcaaatatttgc 29227072  T
Q  118 actaataacatgctaagaagagcttgggaagagataaaccattctttcatactttgagttttctctgtgtt 188  Q
    ||||||||||| |||||||| ||||| || ||  | |||||||| |||||||||| | || ||||||||||    
T  29227073 actaataacatactaagaagtgcttgtgatgatttgaaccattccttcatactttcaattctctctgtgtt 29227143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 540 - 597
Target Start/End: Complemental strand, 25467168 - 25467111
Alignment:
Q  540 gttcaaaatttgtatttgatacatcaatttatgttgatccatttttgtttacattttg 597  Q
    ||||||||||| |||  |||||||||| ||||||| ||||||||||| ||||||||||    
T  25467168 gttcaaaatttatatcggatacatcaacttatgttaatccatttttgcttacattttg 25467111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 530 - 597
Target Start/End: Original strand, 12619657 - 12619724
Alignment:
Q  530 aatatattttgttcaaaatttgtatttgatacatcaatttatgttgatccatttttgtttacattttg 597  Q
    |||||||||  |||||||||| |||   ||||||||| ||||||||||||||||||| ||| ||||||    
T  12619657 aatatatttgattcaaaatttatatcaaatacatcaacttatgttgatccatttttgcttatattttg 12619724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 508 - 598
Target Start/End: Complemental strand, 33670023 - 33669931
Alignment:
Q  508 agcaaaaattggtaaaaata--ttaatatattttgttcaaaatttgtatttgatacatcaatttatgttgatccatttttgtttacattttgg 598  Q
    ||||||||||||| |||| |  ||||| ||||| ||| ||||||||||   ||||||  || ||||||||| ||||||||| |||||||||||    
T  33670023 agcaaaaattggtcaaaaaaagttaatgtatttggtttaaaatttgtaccagatacactaacttatgttgacccatttttgcttacattttgg 33669931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 508 - 598
Target Start/End: Complemental strand, 30848688 - 30848594
Alignment:
Q  508 agcaaaaattggtaaa--aatattaatatattttgttcaaaatttgta--tttgatacatcaatttatgttgatccatttttgtttacattttgg 598  Q
    ||||||||||||| ||  || |||||| ||||||||||||||||||||  || |||||||||| ||||||||||||||||||| |||||||||||    
T  30848688 agcaaaaattggtcaacaaaaattaatgtattttgttcaaaatttgtacattagatacatcaacttatgttgatccatttttgcttacattttgg 30848594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 527 - 596
Target Start/End: Complemental strand, 24980700 - 24980631
Alignment:
Q  527 attaatatattttgttcaaaatttgtatttgatacatcaatttatgttgatccatttttgtttacatttt 596  Q
    |||||| |||||||| |||||||||| |  |||||||||| ||||||||||||||||||  |||||||||    
T  24980700 attaatgtattttgtacaaaatttgtgtcagatacatcaacttatgttgatccatttttacttacatttt 24980631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 527 - 598
Target Start/End: Original strand, 4423184 - 4423255
Alignment:
Q  527 attaatatattttgttcaaaatttgtatttgatacatcaatttatgttgatccatttttgtttacattttgg 598  Q
    ||||||||||||  |||||||||||||    ||||||||| |||| |||||||||||||| |||||||||||    
T  4423184 attaatatatttgattcaaaatttgtaccaaatacatcaacttatattgatccatttttgcttacattttgg 4423255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 528 - 597
Target Start/End: Complemental strand, 54235296 - 54235227
Alignment:
Q  528 ttaatatattttgttcaaaatttgtatttgatacatcaatttatgttgatccatttttgtttacattttg 597  Q
    ||||| ||||| |||||||||||||| |  |||||||||||||| ||||  |||||||| ||||||||||    
T  54235296 ttaatgtatttggttcaaaatttgtactaaatacatcaatttatattgactcatttttgcttacattttg 54235227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 534 - 598
Target Start/End: Original strand, 31784777 - 31784841
Alignment:
Q  534 tattttgttcaaaatttgtatttgatacatcaatttatgttgatccatttttgtttacattttgg 598  Q
    |||||||||||||||||||||| |||||||||| |||||||||   ||||||| |||||||||||    
T  31784777 tattttgttcaaaatttgtattagatacatcaacttatgttgacaaatttttgcttacattttgg 31784841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 527 - 600
Target Start/End: Complemental strand, 3694062 - 3693989
Alignment:
Q  527 attaatatattttgttcaaaatttgtatttgatacatcaatttatgttgatccatttttgtttacattttggaa 600  Q
    |||||| |||||  |||||||||||||||  |||||||||||||||||||  ||||| |  |||||||||||||    
T  3694062 attaatgtatttgattcaaaatttgtattaaatacatcaatttatgttgactcatttctacttacattttggaa 3693989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 558 - 598
Target Start/End: Complemental strand, 37918958 - 37918918
Alignment:
Q  558 atacatcaatttatgttgatccatttttgtttacattttgg 598  Q
    ||||||||| |||||||||| |||||||| |||||||||||    
T  37918958 atacatcaacttatgttgattcatttttgcttacattttgg 37918918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 528 - 598
Target Start/End: Complemental strand, 18732064 - 18731994
Alignment:
Q  528 ttaatatattttgttcaaaatttgtatttgatacatcaatttatgttgatccatttttgtttacattttgg 598  Q
    ||||| ||||| ||||||||||| ||   |||||||||||||||||||||||||||||| ||| |||||||    
T  18732064 ttaatgtatttggttcaaaatttataccagatacatcaatttatgttgatccatttttgcttatattttgg 18731994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 557 - 597
Target Start/End: Original strand, 3719942 - 3719982
Alignment:
Q  557 gatacatcaatttatgttgatccatttttgtttacattttg 597  Q
    |||||||||| ||||||||||| ||||||| ||||||||||    
T  3719942 gatacatcaacttatgttgatcaatttttgcttacattttg 3719982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 528 - 598
Target Start/End: Original strand, 31323850 - 31323920
Alignment:
Q  528 ttaatatattttgttcaaaatttgtatttgatacatcaatttatgttgatccatttttgtttacattttgg 598  Q
    ||||| ||||||||||||||||||||   |||||||||| ||||||||| | ||||||| |||||||||||    
T  31323850 ttaatgtattttgttcaaaatttgtaccagatacatcaacttatgttgacctatttttgcttacattttgg 31323920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 528 - 597
Target Start/End: Original strand, 33822324 - 33822393
Alignment:
Q  528 ttaatatattttgttcaaaatttgtatttgatacatcaatttatgttgatccatttttgtttacattttg 597  Q
    ||||||||||| |||||||||||||||   ||||||||| |||| || ||||||||||  ||||||||||    
T  33822324 ttaatatatttagttcaaaatttgtatcaaatacatcaacttatattaatccatttttacttacattttg 33822393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 558 - 600
Target Start/End: Original strand, 14222859 - 14222901
Alignment:
Q  558 atacatcaatttatgttgatccatttttgtttacattttggaa 600  Q
    ||||||||| ||||||||| ||||||||| |||||||||||||    
T  14222859 atacatcaacttatgttgacccatttttgcttacattttggaa 14222901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 528 - 598
Target Start/End: Complemental strand, 16180509 - 16180439
Alignment:
Q  528 ttaatatattttgttcaaaatttgtatttgatacatcaatttatgttgatccatttttgtttacattttgg 598  Q
    ||||| ||||| ||||||||||| ||||| |||||||||||||||||||   ||||||| |||||||||||    
T  16180509 ttaatgtatttggttcaaaatttatatttaatacatcaatttatgttgactaatttttgcttacattttgg 16180439  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 508 - 598
Target Start/End: Complemental strand, 25090010 - 25089919
Alignment:
Q  508 agcaaaaattggtaaaaata-ttaatatattttgttcaaaatttgtatttgatacatcaatttatgttgatccatttttgtttacattttgg 598  Q
    ||||||||||||||| || | || ||||||||  ||||||||||||||   ||||| ||| ||||||| ||||||||||  |||||||||||    
T  25090010 agcaaaaattggtaacaaaacttcatatatttgcttcaaaatttgtatcaaatacaacaacttatgttaatccattttttcttacattttgg 25089919  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 528 - 598
Target Start/End: Original strand, 10459302 - 10459372
Alignment:
Q  528 ttaatatattttgttcaaaatttgtatttgatacatcaatttatgttgatccatttttgtttacattttgg 598  Q
    ||||| ||||| |||||||||||||||  ||| |||||| ||||||||| | || |||| |||||||||||    
T  10459302 ttaatgtatttggttcaaaatttgtatcagatgcatcaacttatgttgaccaatctttgcttacattttgg 10459372  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 527 - 597
Target Start/End: Original strand, 11386344 - 11386414
Alignment:
Q  527 attaatatattttgttcaaaatttgtatttgatacatcaatttatgttgatccatttttgtttacattttg 597  Q
    ||||||||||||  ||||||||||||||   ||||||||| ||||||||||| | ||||| ||| ||||||    
T  11386344 attaatatatttaattcaaaatttgtatcaaatacatcaacttatgttgatcaaattttgcttatattttg 11386414  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 528 - 598
Target Start/End: Complemental strand, 29291138 - 29291068
Alignment:
Q  528 ttaatatattttgttcaaaatttgtatttgatacatcaatttatgttgatccatttttgtttacattttgg 598  Q
    ||||||||||| ||||||||  | || | ||||||||||||||||||||| |||||||  |||||| ||||    
T  29291138 ttaatatatttggttcaaaaaatttactagatacatcaatttatgttgattcattttttcttacatattgg 29291068  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 528 - 598
Target Start/End: Complemental strand, 38935437 - 38935367
Alignment:
Q  528 ttaatatattttgttcaaaatttgtatttgatacatcaatttatgttgatccatttttgtttacattttgg 598  Q
    ||||| ||||||||||||||| |||||   ||||||||| |||||||||  |||||||| ||| |||||||    
T  38935437 ttaatgtattttgttcaaaatctgtatcaaatacatcaacttatgttgactcatttttgcttatattttgg 38935367  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 541 - 585
Target Start/End: Complemental strand, 5713286 - 5713242
Alignment:
Q  541 ttcaaaatttgtatttgatacatcaatttatgttgatccattttt 585  Q
    |||||||||||||||  ||||||||||||| | ||||||||||||    
T  5713286 ttcaaaatttgtattaaatacatcaatttaagatgatccattttt 5713242  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 562 - 598
Target Start/End: Original strand, 42266029 - 42266065
Alignment:
Q  562 atcaatttatgttgatccatttttgtttacattttgg 598  Q
    ||||||||||| ||||||||||||| |||||||||||    
T  42266029 atcaatttatggtgatccatttttgcttacattttgg 42266065  T

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Target: scaffold0067 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 528 - 598
Target Start/End: Original strand, 35976 - 36046
Alignment:
Q  528 ttaatatattttgttcaaaatttgtatttgatacatcaatttatgttgatccatttttgtttacattttgg 598  Q
    ||||| ||||| || ||||||||||||   |||||||||||||| ||||  ||||||||||||||||||||    
T  35976 ttaatgtatttggtacaaaatttgtatcaaatacatcaatttatattgactcatttttgtttacattttgg 36046  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 528 - 585
Target Start/End: Original strand, 8777805 - 8777862
Alignment:
Q  528 ttaatatattttgttcaaaatttgtatttgatacatcaatttatgttgatccattttt 585  Q
    ||||||||||| ||||||||||| ||||  |||||| || ||||||| ||||||||||    
T  8777805 ttaatatatttggttcaaaatttatattaaatacattaacttatgttaatccattttt 8777862  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 528 - 576
Target Start/End: Original strand, 13210000 - 13210048
Alignment:
Q  528 ttaatatattttgttcaaaatttgtatttgatacatcaatttatgttga 576  Q
    ||||| ||||| |||||||||||||||  |||||||||| |||||||||    
T  13210000 ttaatgtatttggttcaaaatttgtatcagatacatcaacttatgttga 13210048  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 558 - 598
Target Start/End: Complemental strand, 32729769 - 32729729
Alignment:
Q  558 atacatcaatttatgttgatccatttttgtttacattttgg 598  Q
    |||||||||||| ||||||| |||||||| |||||||||||    
T  32729769 atacatcaatttttgttgattcatttttgcttacattttgg 32729729  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 528 - 596
Target Start/End: Complemental strand, 33557849 - 33557781
Alignment:
Q  528 ttaatatattttgttcaaaatttgtatttgatacatcaatttatgttgatccatttttgtttacatttt 596  Q
    ||||| ||||| |||||||||||||||   |||||| || |||||||||||  |||||| |||||||||    
T  33557849 ttaatgtatttagttcaaaatttgtatcaaatacataaacttatgttgatcattttttgcttacatttt 33557781  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 528 - 586
Target Start/End: Complemental strand, 43295276 - 43295221
Alignment:
Q  528 ttaatatattttgttcaaaatttgtatttgatacatcaatttatgttgatccatttttg 586  Q
    ||||||||| | ||||||||||||||    ||||||||| |||||||||||||||||||    
T  43295276 ttaatatatgtggttcaaaatttgtac---atacatcaacttatgttgatccatttttg 43295221  T

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