View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2814_low_31 (Length: 244)
Name: NF2814_low_31
Description: NF2814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2814_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 145 - 226
Target Start/End: Original strand, 24242406 - 24242487
Alignment:
| Q |
145 |
aaacttgttgattatgcaaactaatagaaatttatttgttatatgaaaagggttacaaatacatgacagtggttctaataca |
226 |
Q |
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| T |
24242406 |
aaacttgttgattatgcaaactaatagaaatttatttgttatatgagaagggttacaaatacatgacagtggttctaataca |
24242487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 145 - 226
Target Start/End: Complemental strand, 24299792 - 24299711
Alignment:
| Q |
145 |
aaacttgttgattatgcaaactaatagaaatttatttgttatatgaaaagggttacaaatacatgacagtggttctaataca |
226 |
Q |
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| T |
24299792 |
aaacttgttgattatgcaaactaatagaaatttatttgttatatgagaagggttacaaatacatgacagtggttctaataca |
24299711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 158 - 226
Target Start/End: Original strand, 24230815 - 24230883
Alignment:
| Q |
158 |
atgcaaactaatagaaatttatttgttatatgaaaagggttacaaatacatgacagtggttctaataca |
226 |
Q |
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| T |
24230815 |
atgcaaactaagagaaatttatttattatatgagaagggttacaaatacatgacagtggttctaataca |
24230883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 58 - 96
Target Start/End: Complemental strand, 24300508 - 24300470
Alignment:
| Q |
58 |
ttcctccaaggatatactcctctttgttatagcatagac |
96 |
Q |
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| T |
24300508 |
ttcctccaaggatatactcccctttgttatagcatagac |
24300470 |
T |
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