View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2814_low_34 (Length: 239)
Name: NF2814_low_34
Description: NF2814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2814_low_34 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 21 - 239
Target Start/End: Complemental strand, 32732318 - 32732100
Alignment:
| Q |
21 |
gccgcggcctaaaaggaggcggcgtatgagaaagaggactacctccagccaccggagacgacggcaatgaagatattacaccaccaccagccattctctt |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32732318 |
gccgcggcctaaaaggaggcggcgtatgagaaagaggactacctccagccaccggagacgacggcaatgaagatattacaccaccaccagccattctctt |
32732219 |
T |
|
| Q |
121 |
cgacggagacctctttatcaacctcaatcccaacgctctcttcaccctactcgttggtttcgacaccgtctggttcggctttccaccatctccaccacct |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32732218 |
cgacggagacctctttatcaacctcaatcccaacgctctcttcaccctactcgttggtttcgacaccgtctggttcggctttccaccatctccaccacct |
32732119 |
T |
|
| Q |
221 |
ccattattctcatggttag |
239 |
Q |
| |
|
||| |||| |||||||||| |
|
|
| T |
32732118 |
ccactattgtcatggttag |
32732100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University