View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2814_low_36 (Length: 232)
Name: NF2814_low_36
Description: NF2814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2814_low_36 |
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| [»] chr5 (3 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 1e-92; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 14 - 232
Target Start/End: Complemental strand, 29145137 - 29144916
Alignment:
| Q |
14 |
agaacaaaaagggaagtgaagtgcatgggaaagagtaccata---cttaggtagattaatgaaataatttgcaaataaaatatagaattgaaaatgaaat |
110 |
Q |
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| T |
29145137 |
agaacaaaaagggaagtgaagtgcatgggaaagagtactatatatactaggtagattaatgaaacaatttgcaaataaaatatagaattgaaaatgaatt |
29145038 |
T |
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| Q |
111 |
acctttcaaaatagagtgcaaaaggagcaacacaaatagcagcaacaatgtgtcgataagcaatgagtgcaaagatgtaattcccttgaaccaaaatgcc |
210 |
Q |
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| T |
29145037 |
acctttcaaaatagagtgcaaaaggagcaacacaaatagcagcaacaatatgtcgataagcaatgagtgcaaaaatgtaagtcccttgaaccaaaatgac |
29144938 |
T |
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| Q |
211 |
tcttgatagaagttgcatccca |
232 |
Q |
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| T |
29144937 |
tcttgatagaagttgcatccca |
29144916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 14 - 232
Target Start/End: Original strand, 29226836 - 29227057
Alignment:
| Q |
14 |
agaacaaaaagggaagtgaagtgcatgggaaagagtaccata---cttaggtagattaatgaaataatttgcaaataaaatatagaattgaaaatgaaat |
110 |
Q |
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||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||| || ||||||||||||||||||||||||||||||||| | |
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| T |
29226836 |
agaacaaaaagggaagtaaagtgcatgggaaagagtactatatatactaggtagattaatgcaacaatttgcaaataaaatatagaattgaaaatgaatt |
29226935 |
T |
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| Q |
111 |
acctttcaaaatagagtgcaaaaggagcaacacaaatagcagcaacaatgtgtcgataagcaatgagtgcaaagatgtaattcccttgaaccaaaatgcc |
210 |
Q |
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| T |
29226936 |
acctttcaaaatagagtgcaaaaggagcaacacaaatagcagcaacaatatgtcgataagcaatgagtgcaaaaatgtaagtcccttgaaccaaaatgac |
29227035 |
T |
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| Q |
211 |
tcttgatagaagttgcatccca |
232 |
Q |
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| T |
29227036 |
tcttgatagaagttgcatccca |
29227057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 158
Target Start/End: Original strand, 38852433 - 38852486
Alignment:
| Q |
105 |
tgaaatacctttcaaaatagagtgcaaaaggagcaacacaaatagcagcaacaa |
158 |
Q |
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| T |
38852433 |
tgaattacctttcaaaatatattgctaaaggtgcaacacaaacagcagcaacaa |
38852486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 111 - 232
Target Start/End: Original strand, 5306809 - 5306930
Alignment:
| Q |
111 |
acctttcaaaatagagtgcaaaaggagcaacacaaatagcagcaacaatgtgtcgataagcaatgagtgcaaagatgtaattcccttgaaccaaaatgcc |
210 |
Q |
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| T |
5306809 |
acctttcaaaataaagtgcaaagggggcgacacaaacagcagcaacaatttgtcgatatgcattgagtgcaaaaatgaaagtgccctgaaccaagatgac |
5306908 |
T |
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| Q |
211 |
tcttgatagaagttgcatccca |
232 |
Q |
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| T |
5306909 |
ccttgataaaagttgtatccca |
5306930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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