View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2814_low_39 (Length: 210)
Name: NF2814_low_39
Description: NF2814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2814_low_39 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 18 - 193
Target Start/End: Complemental strand, 55162249 - 55162074
Alignment:
| Q |
18 |
acggtgacggcacgctttcttttctgtcaaatcagagagacaaaactataattagattcttctatatatcttttaatatataccttacctatgagacacc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
55162249 |
acggtgacggcacgctttcttttctgtcaaatcagagagacaaaactataattagattcttctatatatcttttaatatat-----acctatgagacacc |
55162155 |
T |
|
| Q |
118 |
-----aaattgtttttaatttgaagtgtgagtgctgaagtgaagattagcttggactgactcacagtgttgatgatatatt |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55162154 |
aaattaaattgtttttaatttgaagtgtgagtgctgaagtgaagattagcttggactgactcacagtgttgatgatatatt |
55162074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University