View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2814_low_4 (Length: 563)
Name: NF2814_low_4
Description: NF2814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2814_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 18 - 368
Target Start/End: Original strand, 39625694 - 39626045
Alignment:
| Q |
18 |
ggttggagtcttccaccttgttattttnnnnnnnnn-ttgtttgaacacaaaaaagtgtgaaaccagaaattaatatcaattgttaaataatcgaacatt |
116 |
Q |
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| T |
39625694 |
ggttggagtcttccaccttgttattttaaaaaaaaaattgtttgaacacaaaaaagtgtgaaaccagaaattaatatcaattgttaaataattgaacatt |
39625793 |
T |
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| Q |
117 |
cttttagaataagaatttaatgtggaacggttttaacaaatgtctcccttcttggttaaaactcttatcaattttggctaaaaacgtgctagtgtttgaa |
216 |
Q |
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| T |
39625794 |
cttttagaataagaatttaatgtggaacggttttaacaaatgtctcccttcttggttaaaactcttatcaattttggctaaaaacgtgctagtgtttgaa |
39625893 |
T |
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| Q |
217 |
gtttgaaaatttagcatttagatgtgaagggtaaaagagagacaggaatgtagcacatgatattataatttacaaatgaaagtctgaataatgaccttat |
316 |
Q |
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| T |
39625894 |
gtttgaaaatttagcatttagatgtaaagggtaaaagagagacaggaatgtagcacatgatattataatttacaaatgaaagtctgaataatgaccttat |
39625993 |
T |
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| Q |
317 |
acccagattttttatgacatctcttgatcatttagcccatcctatctaatgg |
368 |
Q |
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| T |
39625994 |
acccagattttttatgacatctcttgatcatttagcccatcctatctaatgg |
39626045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 413 - 556
Target Start/End: Original strand, 39626089 - 39626232
Alignment:
| Q |
413 |
gtatatttggattagctcattttgggtacaaaactcgtaatttcaatcttaccaaacttgggcaggacgaagtgatttttcctaaatgtcaaccaaaacc |
512 |
Q |
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| T |
39626089 |
gtatatttggattagctcattttgggtacaaaactcgtaatttcaatcttaccaaacttgggcaggacaaagtgatttttcctaaatgtcaaccaaaacc |
39626188 |
T |
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| Q |
513 |
aaatacacactaggggcctgggtcaagaacaagtgtagtataat |
556 |
Q |
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| T |
39626189 |
aaatacacactaggggcttgggtcaagaacaagtgtagtataat |
39626232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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