View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2814_low_41 (Length: 202)

Name: NF2814_low_41
Description: NF2814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2814_low_41
NF2814_low_41
[»] chr2 (7 HSPs)
chr2 (73-186)||(42435475-42435588)
chr2 (73-174)||(31807775-31807876)
chr2 (73-174)||(36613308-36613409)
chr2 (73-174)||(36621159-36621260)
chr2 (73-174)||(33078091-33078192)
chr2 (73-133)||(5443516-5443576)
chr2 (15-69)||(42435403-42435454)
[»] chr1 (6 HSPs)
chr1 (75-177)||(35159706-35159808)
chr1 (73-174)||(52435384-52435485)
chr1 (73-174)||(46593778-46593880)
chr1 (73-168)||(47720136-47720231)
chr1 (73-168)||(47727128-47727223)
chr1 (74-166)||(34502852-34502944)
[»] chr3 (8 HSPs)
chr3 (73-174)||(46798999-46799100)
chr3 (75-174)||(22926375-22926473)
chr3 (73-168)||(42791534-42791629)
chr3 (75-171)||(7754874-7754971)
chr3 (73-143)||(52796237-52796307)
chr3 (84-174)||(26843062-26843151)
chr3 (74-152)||(49033643-49033720)
chr3 (75-169)||(50121080-50121173)
[»] chr7 (8 HSPs)
chr7 (73-175)||(22200134-22200236)
chr7 (73-175)||(22237585-22237687)
chr7 (73-174)||(41616186-41616287)
chr7 (73-174)||(30703719-30703820)
chr7 (75-174)||(30413642-30413741)
chr7 (75-174)||(23701821-23701921)
chr7 (73-174)||(5546884-5546986)
chr7 (73-174)||(35035617-35035718)
[»] chr8 (8 HSPs)
chr8 (79-175)||(38939317-38939415)
chr8 (75-175)||(12506776-12506876)
chr8 (73-174)||(13068228-13068329)
chr8 (74-175)||(31969561-31969661)
chr8 (72-173)||(45394096-45394199)
chr8 (73-140)||(31452225-31452292)
chr8 (73-143)||(42027532-42027602)
chr8 (74-166)||(31974208-31974299)
[»] chr6 (4 HSPs)
chr6 (78-174)||(4601368-4601465)
chr6 (74-174)||(3435733-3435833)
chr6 (73-140)||(33755637-33755704)
chr6 (75-174)||(7246539-7246637)
[»] chr4 (7 HSPs)
chr4 (73-174)||(21622648-21622749)
chr4 (73-174)||(44655051-44655150)
chr4 (76-174)||(38616895-38616993)
chr4 (74-122)||(28115646-28115694)
chr4 (131-174)||(3525339-3525382)
chr4 (76-134)||(43730852-43730910)
chr4 (75-159)||(45096811-45096895)
[»] chr5 (2 HSPs)
chr5 (73-174)||(20869349-20869450)
chr5 (74-166)||(36784224-36784316)


Alignment Details
Target: chr2 (Bit Score: 90; Significance: 1e-43; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 73 - 186
Target Start/End: Original strand, 42435475 - 42435588
Alignment:
Q  73 tggttaaggaagccaaaagaagaaattgcaaatcaaaaaagacactttttaggtttttaatgcattgattatacatctttcaatgtaaaaattactatat 172  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||| |  ||||||||||||||    
T  42435475 tggttaaggaagccaaaagaagaaattgcaaatcaaaaaagacaatttttagatttttaatgcattgattacacatctttcagtacaaaaattactatat 42435574  T
Q  173 ttatttactccctt 186  Q
    ||||||||||||||    
T  42435575 ttatttactccctt 42435588  T

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Target: chr2; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 73 - 174
Target Start/End: Original strand, 31807775 - 31807876
Alignment:
Q  73 tggttaaggaagccaaaagaagaaattgcaaatcaaaaaagacactttttaggtttttaatgcattgattatacatctttcaatgtaaaaattactatat 172  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||||| | ||||||||||||||||| ||| |||||||  |||| ||||||||||    
T  31807775 tggttaaggaagccaaaagaagaaattgtaagtcaaaaaagacactttttaagcttttaatgcattgattacacaactttcaacataaatattactatat 31807874  T
Q  173 tt 174  Q
    ||    
T  31807875 tt 31807876  T

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Target: chr2; HSP #3
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 73 - 174
Target Start/End: Complemental strand, 36613409 - 36613308
Alignment:
Q  73 tggttaaggaagccaaaagaagaaattgcaaatcaaaaaagacactttttaggtttttaatgcattgattatacatctttcaatgtaaaaattactatat 172  Q
    |||||||||||||||||||| ||||||| |||| ||||||||||||||||| ||||| ||||||||||||| ||| ||||| ||| ||| ||||||||||    
T  36613409 tggttaaggaagccaaaagaggaaattgtaaattaaaaaagacactttttaagttttgaatgcattgattacacaactttccatgcaaatattactatat 36613310  T
Q  173 tt 174  Q
    ||    
T  36613309 tt 36613308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 73 - 174
Target Start/End: Complemental strand, 36621260 - 36621159
Alignment:
Q  73 tggttaaggaagccaaaagaagaaattgcaaatcaaaaaagacactttttaggtttttaatgcattgattatacatctttcaatgtaaaaattactatat 172  Q
    |||||||||||||||||||| ||||||| |||| ||||||||||||||||| ||||| ||||||||||||| ||| ||||| ||| ||| ||||||||||    
T  36621260 tggttaaggaagccaaaagaggaaattgtaaattaaaaaagacactttttaagttttgaatgcattgattacacaactttccatgcaaatattactatat 36621161  T
Q  173 tt 174  Q
    ||    
T  36621160 tt 36621159  T

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Target: chr2; HSP #5
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 73 - 174
Target Start/End: Complemental strand, 33078192 - 33078091
Alignment:
Q  73 tggttaaggaagccaaaagaagaaattgcaaatcaaaaaagacactttttaggtttttaatgcattgattatacatctttcaatgtaaaaattactatat 172  Q
    ||||||||||||||||||||||||| || || |||||||||| ||||||||   |||||||||||||||||  || ||||||||| ||| ||||||||||    
T  33078192 tggttaaggaagccaaaagaagaaagtgaaagtcaaaaaagatactttttaatcttttaatgcattgattactcagctttcaatgcaaatattactatat 33078093  T
Q  173 tt 174  Q
    ||    
T  33078092 tt 33078091  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 133
Target Start/End: Original strand, 5443516 - 5443576
Alignment:
Q  73 tggttaaggaagccaaaagaagaaattgcaaatcaaaaaagacactttttaggtttttaat 133  Q
    |||||||||| || |||||||||||||  ||||||||| ||| |||||||| |||||||||    
T  5443516 tggttaaggatgctaaaagaagaaattctaaatcaaaatagatactttttaagtttttaat 5443576  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 15 - 69
Target Start/End: Original strand, 42435403 - 42435454
Alignment:
Q  15 cacagataatcaactattaacatcaagaattgtagaaaaagttaaagggtcatgt 69  Q
    ||||||||||||  |||||||||||||||| |||| |||||||||||||||||||    
T  42435403 cacagataatca--tattaacatcaagaat-gtaggaaaagttaaagggtcatgt 42435454  T

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Target: chr1 (Bit Score: 75; Significance: 9e-35; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 75 - 177
Target Start/End: Complemental strand, 35159808 - 35159706
Alignment:
Q  75 gttaaggaagccaaaagaagaaattgcaaatcaaaaaagacactttttaggtttttaatgcattgattatacatctttcaatgtaaaaattactatattt 174  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||||||   ||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  35159808 gttaaggaagccaaaagaagaaattgcaactcaaaaaagaaactttttaaacttttaatgcattgattacacatctttcaatgcaaaaattactatattt 35159709  T
Q  175 att 177  Q
    |||    
T  35159708 att 35159706  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 73 - 174
Target Start/End: Original strand, 52435384 - 52435485
Alignment:
Q  73 tggttaaggaagccaaaagaagaaattgcaaatcaaaaaagacactttttaggtttttaatgcattgattatacatctttcaatgtaaaaattactatat 172  Q
    ||||||||||||||||||||||||| || |||| |||||| | ||||||||   |||||||||||||||||||||  |||||||| ||| |||| |||||    
T  52435384 tggttaaggaagccaaaagaagaaagtgaaaataaaaaaaaatactttttaatcttttaatgcattgattatacagttttcaatgcaaatattattatat 52435483  T
Q  173 tt 174  Q
    ||    
T  52435484 tt 52435485  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 73 - 174
Target Start/End: Original strand, 46593778 - 46593880
Alignment:
Q  73 tggttaaggaagccaaaagaagaaatt-gcaaatcaaaaaagacactttttaggtttttaatgcattgattatacatctttcaatgtaaaaattactata 171  Q
    |||||||||||||||||||||||| || | || |||||||| | |||||||| |||||| || ||||||||| |||  ||||||||  || |||||||||    
T  46593778 tggttaaggaagccaaaagaagaattttgtaagtcaaaaaatatactttttaagttttttatacattgattacacaaatttcaatgctaatattactata 46593877  T
Q  172 ttt 174  Q
    |||    
T  46593878 ttt 46593880  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 168
Target Start/End: Original strand, 47720136 - 47720231
Alignment:
Q  73 tggttaaggaagccaaaagaagaaattgcaaatcaaaaaagacactttttaggtttttaatgcattgattatacatctttcaatgtaaaaattact 168  Q
    |||||||| ||| || || ||||||||  |||| |||||||| | ||||||   ||||||||||||||||||||| |||| |||||||| ||||||    
T  47720136 tggttaagaaagtcagaaaaagaaattataaattaaaaaagatattttttaaacttttaatgcattgattatacaacttttaatgtaaatattact 47720231  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 168
Target Start/End: Original strand, 47727128 - 47727223
Alignment:
Q  73 tggttaaggaagccaaaagaagaaattgcaaatcaaaaaagacactttttaggtttttaatgcattgattatacatctttcaatgtaaaaattact 168  Q
    |||||||| ||| || || ||||||||  |||| |||||||| | ||||||   ||||||||||||||||||||| |||| |||||||| ||||||    
T  47727128 tggttaagaaagtcagaaaaagaaattataaattaaaaaagatattttttaaacttttaatgcattgattatacaacttttaatgtaaatattact 47727223  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 166
Target Start/End: Original strand, 34502852 - 34502944
Alignment:
Q  74 ggttaaggaagccaaaagaagaaattgcaaatcaaaaaagacactttttaggtttttaatgcattgattatacatctttcaatgtaaaaatta 166  Q
    |||||||||||  ||||||  |||||  || | |||||||| | |||||| | ||||||||||||||||| ||| ||||||||| ||| ||||    
T  34502852 ggttaaggaagggaaaagagaaaattttaacttaaaaaagatattttttaagcttttaatgcattgattacacaactttcaatgcaaatatta 34502944  T

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Target: chr3 (Bit Score: 70; Significance: 9e-32; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 73 - 174
Target Start/End: Original strand, 46798999 - 46799100
Alignment:
Q  73 tggttaaggaagccaaaagaagaaattgcaaatcaaaaaagacactttttaggtttttaatgcattgattatacatctttcaatgtaaaaattactatat 172  Q
    ||||||||||||||||||||||||||||  ||| ||||||||||||||||| | ||||||||||||||||| |||||||| |||| ||||||||||||||    
T  46798999 tggttaaggaagccaaaagaagaaattgttaataaaaaaagacactttttaagcttttaatgcattgattacacatcttttaatgcaaaaattactatat 46799098  T
Q  173 tt 174  Q
    ||    
T  46799099 tt 46799100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 75 - 174
Target Start/End: Original strand, 22926375 - 22926473
Alignment:
Q  75 gttaaggaagccaaaagaagaaattgcaaatcaaaaaagacactttttaggtttttaatgcattgattatacatctttcaatgtaaaaattactatattt 174  Q
    ||||||||||||||| |||||||| | || ||| |||||||||||||||   ||||||||||||||||| ||| ||||||||| ||| ||||||||||||    
T  22926375 gttaaggaagccaaatgaagaaat-gtaagtcagaaaagacactttttaaacttttaatgcattgattacacaactttcaatgcaaatattactatattt 22926473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 73 - 168
Target Start/End: Complemental strand, 42791629 - 42791534
Alignment:
Q  73 tggttaaggaagccaaaagaagaaattgcaaatcaaaaaagacactttttaggtttttaatgcattgattatacatctttcaatgtaaaaattact 168  Q
    ||||||||||||| ||||||| |||||| || | ||||||||||||||||  |||||||||| |||||||||||| || |||||| ||| ||||||    
T  42791629 tggttaaggaagctaaaagaaaaaattgtaagttaaaaaagacactttttgagtttttaatgtattgattatacaactatcaatgaaaatattact 42791534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 75 - 171
Target Start/End: Complemental strand, 7754971 - 7754874
Alignment:
Q  75 gttaaggaagccaaaagaagaaattgcaaatcaaaaaagacac-tttttaggtttttaatgcattgattatacatctttcaatgtaaaaattactata 171  Q
    |||||||||||||||| |||||||| |||||||||||||| || ||||||   ||||||| ||||||||| ||  |||||||||||||| ||||||||    
T  7754971 gttaaggaagccaaaacaagaaattacaaatcaaaaaagatacatttttaaacttttaattcattgattacactgctttcaatgtaaaacttactata 7754874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 73 - 143
Target Start/End: Original strand, 52796237 - 52796307
Alignment:
Q  73 tggttaaggaagccaaaagaagaaattgcaaatcaaaaaagacactttttaggtttttaatgcattgatta 143  Q
    ||||||||||| |||||||||||||||  ||||||||| ||||||||||||   |||||||||||||||||    
T  52796237 tggttaaggaatccaaaagaagaaattaaaaatcaaaagagacactttttaatcttttaatgcattgatta 52796307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 84 - 174
Target Start/End: Complemental strand, 26843151 - 26843062
Alignment:
Q  84 gccaaaagaagaaattgcaaatcaaaaaagacactttttaggtttttaatgcattgattatacatctttcaatgtaaaaattactatattt 174  Q
    ||||||||||||||||| |||| |||||| | || ||||| ||||||||||||||||||  |||  |||||| | ||| ||||||||||||    
T  26843151 gccaaaagaagaaattgtaaattaaaaaa-ataccttttaagtttttaatgcattgatttcacagttttcaaagcaaatattactatattt 26843062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 74 - 152
Target Start/End: Original strand, 49033643 - 49033720
Alignment:
Q  74 ggttaaggaagccaaaagaagaaattgcaaatcaaaaaagacactttttaggtttttaatgcattgattatacatcttt 152  Q
    ||||||||||||||||  ||||||||| || |||||||| ||||||||||  ||||||||||||| |||| ||| ||||    
T  49033643 ggttaaggaagccaaataaagaaattgtaagtcaaaaaa-acactttttaaatttttaatgcatttattacacaacttt 49033720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 75 - 169
Target Start/End: Complemental strand, 50121173 - 50121080
Alignment:
Q  75 gttaaggaagccaaaagaagaaattgcaaatcaaaaaagacactttttaggtttttaatgcattgattatacatctttcaatgtaaaaattacta 169  Q
    ||||||||||| |||||||||||||| ||||||||| ||||| |||||| | || |||| |||| |||| ||| |||| |||| ||| |||||||    
T  50121173 gttaaggaagc-aaaagaagaaattgtaaatcaaaagagacattttttaagcttgtaattcattaattacacaacttttaatgcaaatattacta 50121080  T

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Target: chr7 (Bit Score: 67; Significance: 6e-30; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 73 - 175
Target Start/End: Original strand, 22200134 - 22200236
Alignment:
Q  73 tggttaaggaagccaaaagaagaaattgcaaatcaaaaaagacactttttaggtttttaatgcattgattatacatctttcaatgtaaaaattactatat 172  Q
    |||||||||||||||||||||||||||| || | |||| ||||||||||||| ||||||||| |||||||| ||||||||||||  ||||||||||||||    
T  22200134 tggttaaggaagccaaaagaagaaattgtaagttaaaatagacactttttagatttttaatgtattgattacacatctttcaatacaaaaattactatat 22200233  T
Q  173 tta 175  Q
    |||    
T  22200234 tta 22200236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 73 - 175
Target Start/End: Complemental strand, 22237687 - 22237585
Alignment:
Q  73 tggttaaggaagccaaaagaagaaattgcaaatcaaaaaagacactttttaggtttttaatgcattgattatacatctttcaatgtaaaaattactatat 172  Q
    |||||||||||||||||||||||||||| || | |||| ||||||||||||| ||||||||| |||||||| ||||||||||||  ||||||||||||||    
T  22237687 tggttaaggaagccaaaagaagaaattgtaagttaaaatagacactttttagatttttaatgtattgattacacatctttcaatacaaaaattactatat 22237588  T
Q  173 tta 175  Q
    |||    
T  22237587 tta 22237585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 73 - 174
Target Start/End: Complemental strand, 41616287 - 41616186
Alignment:
Q  73 tggttaaggaagccaaaagaagaaattgcaaatcaaaaaagacactttttaggtttttaatgcattgattatacatctttcaatgtaaaaattactatat 172  Q
    |||||||||| | |||||||||||| || || ||||||||||||||| |||  ||||||||||||| |||| ||||||||||||||||| ||||||||||    
T  41616287 tggttaaggagggcaaaagaagaaagtgaaagtcaaaaaagacacttattaattttttaatgcattaattacacatctttcaatgtaaatattactatat 41616188  T
Q  173 tt 174  Q
    ||    
T  41616187 tt 41616186  T

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Target: chr7; HSP #4
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 73 - 174
Target Start/End: Original strand, 30703719 - 30703820
Alignment:
Q  73 tggttaaggaagccaaaagaagaaattgcaaatcaaaaaagacactttttaggtttttaatgcattgattatacatctttcaatgtaaaaattactatat 172  Q
    ||||||||||||||||||||||||| || || | ||||||||||||| |||   ||||||||||||||||| ||| |||||||| |||| ||||||||||    
T  30703719 tggttaaggaagccaaaagaagaaagtgaaagtaaaaaaagacacttgttaatcttttaatgcattgattacacaactttcaatttaaatattactatat 30703818  T
Q  173 tt 174  Q
    ||    
T  30703819 tt 30703820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 75 - 174
Target Start/End: Complemental strand, 30413741 - 30413642
Alignment:
Q  75 gttaaggaagccaaaagaagaaattgcaaatcaaaaaagacactttttaggtttttaatgcattgattatacatctttcaatgtaaaaattactatattt 174  Q
    |||||||||| |||||||| |||||| || |||||||||||||||||||  ||||||||| |||||||| | | |||| |||| ||||||||||||||||    
T  30413741 gttaaggaagtcaaaagaaaaaattgtaagtcaaaaaagacactttttaaatttttaatgaattgattaaataacttttaatgaaaaaattactatattt 30413642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 75 - 174
Target Start/End: Complemental strand, 23701921 - 23701821
Alignment:
Q  75 gttaaggaagccaaaagaagaaattgcaaatcaaaaaagacactttttaggtttttaatgcattgattatacatctttcaatgtaaaa-attactatatt 173  Q
    ||||||||||| |||||| ||||||  || | ||||| ||||||||||| |||||||||||||||| || | | |||||||||||||| |||||||||||    
T  23701921 gttaaggaagctaaaagaggaaatttgaagtaaaaaatgacactttttaagtttttaatgcattgactacatagctttcaatgtaaaatattactatatt 23701822  T
Q  174 t 174  Q
    |    
T  23701821 t 23701821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 73 - 174
Target Start/End: Original strand, 5546884 - 5546986
Alignment:
Q  73 tggttaaggaagccaaaagaagaaatt-gcaaatcaaaaaagacactttttaggtttttaatgcattgattatacatctttcaatgtaaaaattactata 171  Q
    ||||||||||| |||||| || ||||| || | | |||||| ||| |||||| | |||||||||||||||||||||  |||||||| |||||||||||||    
T  5546884 tggttaaggaatccaaaaaaaaaaatttgctagttaaaaaatacagtttttaagcttttaatgcattgattatacaattttcaatgcaaaaattactata 5546983  T
Q  172 ttt 174  Q
    |||    
T  5546984 ttt 5546986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 73 - 174
Target Start/End: Original strand, 35035617 - 35035718
Alignment:
Q  73 tggttaaggaagccaaaagaagaaattgcaaatcaaaaaagacactttttaggtttttaatgcattgattatacatctttcaatgtaaaaattactatat 172  Q
    ||||||| ||||||||| | |||||||| || | |||||| | |||||||| | |||||||||||||| || ||| ||||||||  ||||||||||||||    
T  35035617 tggttaaagaagccaaagggagaaattgtaagtaaaaaaatatactttttaagcttttaatgcattgaatacacaactttcaatacaaaaattactatat 35035716  T
Q  173 tt 174  Q
    ||    
T  35035717 tt 35035718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 1e-27; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 79 - 175
Target Start/End: Complemental strand, 38939415 - 38939317
Alignment:
Q  79 aggaagccaaaagaagaaattgcaaa-tcaaaaaagacactttttaggt-ttttaatgcattgattatacatctttcaatgtaaaaattactatattta 175  Q
    |||||||||||||||||| ||||||| ||||||||||||||||| |||  ||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  38939415 aggaagccaaaagaagaatttgcaaagtcaaaaaagacacttttgaggaattttaatgcattgattacacatctttcaatgaaaaaattactatattta 38939317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 75 - 175
Target Start/End: Original strand, 12506776 - 12506876
Alignment:
Q  75 gttaaggaagccaaaagaagaaattgcaaatcaaaaaagacactttttaggtttttaatgcattgattatacatctttcaatgtaaaaattactatattt 174  Q
    ||||||||| | |||||||||||||| || |||||||||||||||||||  ||||||||| |||||||||||| ||||||||  ||| ||||||||||||    
T  12506776 gttaaggaaactaaaagaagaaattgtaagtcaaaaaagacactttttaaatttttaatgtattgattatacaactttcaataaaaatattactatattt 12506875  T
Q  175 a 175  Q
    |    
T  12506876 a 12506876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 73 - 174
Target Start/End: Original strand, 13068228 - 13068329
Alignment:
Q  73 tggttaaggaagccaaaagaagaaattgcaaatcaaaaaagacactttttaggtttttaatgcattgattatacatctttcaatgtaaaaattactatat 172  Q
    ||||||||||||| ||||||| ||||||  | |||||||||||||||||||   ||||||| ||||||||| ||| ||||||||| ||| |||| |||||    
T  13068228 tggttaaggaagctaaaagaataaattgtgagtcaaaaaagacactttttaaacttttaatacattgattacacaactttcaatgcaaatattattatat 13068327  T
Q  173 tt 174  Q
    ||    
T  13068328 tt 13068329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 74 - 175
Target Start/End: Complemental strand, 31969661 - 31969561
Alignment:
Q  74 ggttaaggaagccaaaagaagaaattgcaaatcaaaaaagacactttttaggtttttaatgcattgattatacatctttcaatgtaaaaattactatatt 173  Q
    ||||||| ||||||||||||||||||| || ||||||| ||||| |||||  ||||||||  |||||||| | | ||||||||| ||| |||||||||||    
T  31969661 ggttaagaaagccaaaagaagaaattgtaagtcaaaaa-gacacattttaaatttttaatttattgattaaataactttcaatgcaaatattactatatt 31969563  T
Q  174 ta 175  Q
    ||    
T  31969562 ta 31969561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 173
Target Start/End: Complemental strand, 45394199 - 45394096
Alignment:
Q  72 ttggttaaggaagccaaaagaagaaattgcaaatcaaaaaagacacttttt--aggtttttaatgcattgattatacatctttcaatgtaaaaattacta 169  Q
    ||||||||||||| ||||||||||||||  || | |||||||| |||||||  |   ||||||| ||||||||| ||| |||||||||||||| ||||||    
T  45394199 ttggttaaggaagtcaaaagaagaaattataagtaaaaaaagatactttttttaaacttttaatacattgattacacaactttcaatgtaaaacttacta 45394100  T
Q  170 tatt 173  Q
    ||||    
T  45394099 tatt 45394096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 140
Target Start/End: Original strand, 31452225 - 31452292
Alignment:
Q  73 tggttaaggaagccaaaagaagaaattgcaaatcaaaaaagacactttttaggtttttaatgcattga 140  Q
    |||||||||||| ||||||||||||||  || ||||||| |||| |||||| | ||||||||||||||    
T  31452225 tggttaaggaagtcaaaagaagaaattttaactcaaaaatgacattttttaagcttttaatgcattga 31452292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 143
Target Start/End: Complemental strand, 42027602 - 42027532
Alignment:
Q  73 tggttaaggaagccaaaagaagaaattgcaaatcaaaaaagacactttttaggtttttaatgcattgatta 143  Q
    |||||||||||| |||||||||||||||||| | |||||||| |  |||||   |||||||| ||||||||    
T  42027602 tggttaaggaagtcaaaagaagaaattgcaagtaaaaaaagatatattttaaacttttaatgtattgatta 42027532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 166
Target Start/End: Complemental strand, 31974299 - 31974208
Alignment:
Q  74 ggttaaggaagccaaaagaagaaattgcaaatcaaaaaagacactttttaggtttttaatgcattgattatacatctttcaatgtaaaaatta 166  Q
    ||||||| ||||| ||||||||||||| || || |||||||||| |||||  |||| |||  |||||||| | | ||||||||||||| ||||    
T  31974299 ggttaagaaagcctaaagaagaaattgtaagtc-aaaaagacacattttaaattttaaatttattgattacataactttcaatgtaaatatta 31974208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 5e-27; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 78 - 174
Target Start/End: Original strand, 4601368 - 4601465
Alignment:
Q  78 aaggaagccaaaagaagaaattgcaaatcaaaaaagacactttttaggtttttaatgcattgattatacatctttcaatgtaaaa-attactatattt 174  Q
    ||||||||||||||||||||||  ||||||||||||| ||||||||  |||||||||||||||||| ||| |||||||||||||| ||||||||||||    
T  4601368 aaggaagccaaaagaagaaatttgaaatcaaaaaagatactttttaaatttttaatgcattgattacacaactttcaatgtaaaatattactatattt 4601465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 74 - 174
Target Start/End: Original strand, 3435733 - 3435833
Alignment:
Q  74 ggttaaggaagccaaaagaagaaattgcaaatcaaaaaagacactttttaggtttttaatgcattgattatacatctttcaatgtaaaaattactatatt 173  Q
    |||||| ||||| |||||||||||||  |||||||||||||||||||||| |||| |||||||||||||| | | ||||||||| ||| |||||||||||    
T  3435733 ggttaaagaagctaaaagaagaaattataaatcaaaaaagacactttttaagtttataatgcattgattacataactttcaatgcaaatattactatatt 3435832  T
Q  174 t 174  Q
    |    
T  3435833 t 3435833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 73 - 140
Target Start/End: Original strand, 33755637 - 33755704
Alignment:
Q  73 tggttaaggaagccaaaagaagaaattgcaaatcaaaaaagacactttttaggtttttaatgcattga 140  Q
    |||||||||||||||||||| ||||||  || ||||||| ||||||||||| | ||||||||||||||    
T  33755637 tggttaaggaagccaaaagaggaaattttaactcaaaaatgacactttttaagcttttaatgcattga 33755704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 75 - 174
Target Start/End: Original strand, 7246539 - 7246637
Alignment:
Q  75 gttaaggaagccaaaagaagaaattgcaaatcaaaaaagacactttttaggtttttaatgcattgattatacatctttcaatgtaaaaattactatattt 174  Q
    |||||||| || |||||||||||||  |||| |||||||| | |||||| | |||||||| |||||||| ||| || |||||| ||| | ||||||||||    
T  7246539 gttaaggatgctaaaagaagaaattctaaattaaaaaagatattttttaagcttttaatgtattgattacacaactatcaatgcaaata-tactatattt 7246637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 1e-24; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 73 - 174
Target Start/End: Original strand, 21622648 - 21622749
Alignment:
Q  73 tggttaaggaagccaaaagaagaaattgcaaatcaaaaaagacactttttaggtttttaatgcattgattatacatctttcaatgtaaaaattactatat 172  Q
    ||||||||||||||||||||| |||||| || | |||||||||| |||| |  |||||||||||||||||| ||| ||||||||||||| ||||||||||    
T  21622648 tggttaaggaagccaaaagaaaaaattgtaagttaaaaaagacatttttcaaatttttaatgcattgattacacaactttcaatgtaaatattactatat 21622747  T
Q  173 tt 174  Q
    ||    
T  21622748 tt 21622749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 73 - 174
Target Start/End: Original strand, 44655051 - 44655150
Alignment:
Q  73 tggttaaggaagccaaaagaagaaattgcaaatcaaaaaagacactttttaggtttttaatgcattgattatacatctttcaatgtaaaaattactatat 172  Q
    |||||||||||||||||||||||||||  ||||  ||||||| | ||||||   ||||||||||||||||| | | ||| ||||| ||| ||||||||||    
T  44655051 tggttaaggaagccaaaagaagaaattaaaaat--aaaaagatattttttatacttttaatgcattgattacagaacttccaatgcaaatattactatat 44655148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 76 - 174
Target Start/End: Original strand, 38616895 - 38616993
Alignment:
Q  76 ttaaggaagccaaaagaagaaattgcaaatcaaaaaagacactttttaggtttttaatgcattgattatacatctttcaatgtaaaaattactatattt 174  Q
    ||||||||| |||||||||||| |  || |||||||||| |||| |||   |||||||| |||||||| ||| |||||||| |||| |||| |||||||    
T  38616895 ttaaggaaggcaaaagaagaaagtaaaagtcaaaaaagatacttgttaatattttaatgtattgattacacaactttcaatataaatattagtatattt 38616993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 122
Target Start/End: Original strand, 28115646 - 28115694
Alignment:
Q  74 ggttaaggaagccaaaagaagaaattgcaaatcaaaaaagacacttttt 122  Q
    |||||||||||||||||||| |||||| |||| |||||||||| |||||    
T  28115646 ggttaaggaagccaaaagaaaaaattgtaaataaaaaaagacatttttt 28115694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 131 - 174
Target Start/End: Complemental strand, 3525382 - 3525339
Alignment:
Q  131 aatgcattgattatacatctttcaatgtaaaaattactatattt 174  Q
    ||||||||||||||||| ||||||||| ||| ||||||||||||    
T  3525382 aatgcattgattatacaactttcaatgcaaatattactatattt 3525339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 134
Target Start/End: Complemental strand, 43730910 - 43730852
Alignment:
Q  76 ttaaggaagccaaaagaagaaattgcaaatcaaaaaagacactttttaggtttttaatg 134  Q
    ||||||||| |||||||| |||||| || | ||||||||||||| ||| ||||||||||    
T  43730910 ttaaggaagacaaaagaaaaaattgtaagttaaaaaagacacttcttaagtttttaatg 43730852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 159
Target Start/End: Original strand, 45096811 - 45096895
Alignment:
Q  75 gttaaggaagccaaaagaagaaattgcaaatcaaaaaagacactttttaggtttttaatgcattgattatacatctttcaatgta 159  Q
    |||||||||| ||||||||||||||| || | |||||| | || |||||   ||||||| ||||||||| ||| |||| ||||||    
T  45096811 gttaaggaagtcaaaagaagaaattgtaagttaaaaaatatacattttaaacttttaatacattgattacacagcttttaatgta 45096895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 73 - 174
Target Start/End: Complemental strand, 20869450 - 20869349
Alignment:
Q  73 tggttaaggaagccaaaagaagaaattgcaaatcaaaaaagacactttttaggtttttaatgcattgattatacatctttcaatgtaaaaattactatat 172  Q
    ||||||||||||||||||||  |||||  || | ||||| ||||||||||| | ||||||||||||||||| ||| ||||||||| ||| | ||| ||||    
T  20869450 tggttaaggaagccaaaagagaaaattttaatttaaaaatgacactttttaagcttttaatgcattgattacacaactttcaatgcaaatactaccatat 20869351  T
Q  173 tt 174  Q
    ||    
T  20869350 tt 20869349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 166
Target Start/End: Complemental strand, 36784316 - 36784224
Alignment:
Q  74 ggttaaggaagccaaaagaagaaattgcaaatcaaaaaagacactttttaggtttttaatgcattgattatacatctttcaatgtaaaaatta 166  Q
    |||||||||||  ||||||||||| |  || | ||||| |||||||||||   |||||||| |||||||| ||| ||||||||| ||| ||||    
T  36784316 ggttaaggaagaaaaaagaagaaagtaaaagttaaaaaggacactttttaatcttttaatgtattgattacacagctttcaatgcaaatatta 36784224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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