View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2814_low_6 (Length: 543)
Name: NF2814_low_6
Description: NF2814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2814_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 12 - 528
Target Start/End: Original strand, 18938402 - 18938918
Alignment:
| Q |
12 |
ataggtcgaagcggggctgtggaattttattaagaataaattggaaatagttgatggttttattgatctcttcttcctactgctcgaattgctatctcat |
111 |
Q |
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| T |
18938402 |
ataggtcgaagcggggctgtggaattttattaaggataaattggaaatagttgatggttttgttgatctcttcttcctactgctcgaattgctatctcat |
18938501 |
T |
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| Q |
112 |
gatagcttacctatgtttgctatgaccatgtggtgtatttgaaagcgaagaaatgatagactatgggatgatgcggaaacacgacctgcaatatcaattg |
211 |
Q |
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| T |
18938502 |
gatagcttacatatgtttgctatgaccatgtggtgtatttgaaagcgtagaaatgatagactatgggatgatgtggaaacacgacctgcaatatcaattg |
18938601 |
T |
|
| Q |
212 |
ggttggcgcgtgaatctttatatcaatggcaacatgtacgtgcaaagcaacgacaaatggagaatgaatcaagtttgatcagtggcacatgaatagaacg |
311 |
Q |
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| T |
18938602 |
ggttggcgcgtgaatctttatatcaatggcaacatgtacgcgcaaagcaacgacaaatggagaatgaatcaagtttgatcagtggcacatgaatagaacg |
18938701 |
T |
|
| Q |
312 |
acatagcagcagcaacaccattcgatgaagaaaatcagcctttggtggggttaaatgtaatgtagacgtctcaattttcaaggatcaaaggtgctatggt |
411 |
Q |
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| T |
18938702 |
gcatagcagcagcaacaccatttgatgaagaaaaccagcctttggtggggttaaatgtaatttatacgtctcaattttcaaggatcaaaggtgctatggc |
18938801 |
T |
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| Q |
412 |
gttggaatgcatttgaggggagaaaacgacgagtatatagcagctaaaacaacttggtttctaggaattccacaaccacgtgaagtggaagtgtgttgtc |
511 |
Q |
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| T |
18938802 |
gttggaatgcatttgaggggagaaaacgacgagtatatagcagctaaaacaacttggtttcaaggaattccacaaccacatgaagtggaagcgtgcggtc |
18938901 |
T |
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| Q |
512 |
taacagaggcaataatt |
528 |
Q |
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| T |
18938902 |
taacagaggcaataatt |
18938918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 157
Target Start/End: Complemental strand, 27914335 - 27914197
Alignment:
| Q |
19 |
gaagcggggctgtggaattttattaagaataaattggaaatagttgatggttttattgatctcttcttcctactgctcgaattgctatctcatgatagct |
118 |
Q |
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|||||| | |||||||||||||| | |||||||||||||||||||||||||| ||||| || |||| | || || ||||| | || ||||||| | |
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| T |
27914335 |
gaagcgagactgtggaattttatccatgataaattggaaatagttgatggttttgccgatctttttttccaattgatcaaattgttgtcccatgataacc |
27914236 |
T |
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| Q |
119 |
tacctatgtttgctatgaccatgtggtgtatttgaaagc |
157 |
Q |
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| T |
27914235 |
tacacatgtttgttatgaccatctggtgcatttggaagc |
27914197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 442 - 489
Target Start/End: Complemental strand, 27913927 - 27913880
Alignment:
| Q |
442 |
gagtatatagcagctaaaacaacttggtttctaggaattccacaacca |
489 |
Q |
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| T |
27913927 |
gagtatatagcagcaaaaacaacttggtttcaaggcattccataacca |
27913880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 423 - 502
Target Start/End: Complemental strand, 53839785 - 53839709
Alignment:
| Q |
423 |
tttgaggggagaaaacgacgagtatatagcagctaaaacaacttggtttctaggaattccacaaccacgtgaagtggaag |
502 |
Q |
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| T |
53839785 |
tttgaggggagaaaacga---gtacatagcagcaaaaacaaattggtttcaatgaattccacaaccaaatgaagcggaag |
53839709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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