View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2814_low_8 (Length: 472)
Name: NF2814_low_8
Description: NF2814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2814_low_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 228 - 431
Target Start/End: Original strand, 39304828 - 39305031
Alignment:
| Q |
228 |
gatgaattaaataatcaacatttcaacaatagtgtatatacatctacaaatctcatgtctcaacctccttatatgactactgatcaaccatttccacttc |
327 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
39304828 |
gatgaattaaataatcaacatttcaacaatagtgtatatacatctacaaatctcatgtctcaaactccttatatgactactgatcaaccatttccacttc |
39304927 |
T |
|
| Q |
328 |
ctttatctccaaattcgattcaaaaacaattacgaccgcaagatcagattgattccatagggcattggtatgaatgagtaagaccaagctaatttcatgt |
427 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
39304928 |
ctttctctccaaattcgattcaaaaacaattacgacagcaagatcagattgattccatagggcattggtatgaatgagtaagaccaagctaattttatgt |
39305027 |
T |
|
| Q |
428 |
ttgg |
431 |
Q |
| |
|
|||| |
|
|
| T |
39305028 |
ttgg |
39305031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 39304607 - 39304771
Alignment:
| Q |
1 |
tcaccggggaagcatcggataaatgtcaaagagaaaaaagaaagacaatcaatggtgatgatattatttgggctattacaacgttaggctttgaagaata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39304607 |
tcaccggggaagcatcggataaatgtcaaagagaaaaaagaaagacaatcaacggtgatgatattatttgggctattacaacgttaggctttgaagaata |
39304706 |
T |
|
| Q |
101 |
tgtggaaccattaaaatgttaccttcaaaaatatagagatattgaaggtgagaaagttaatgttc |
165 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39304707 |
tgtggaaccattaaaatgttaccttcaaaaatatagagatattgaaggtgagaaagttaatgttc |
39304771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 38281701 - 38281774
Alignment:
| Q |
9 |
gaagcatcggataaatgtcaaagagaaaaaagaaagacaatcaatggtgatgatattatttgggctattacaac |
82 |
Q |
| |
|
||||| || ||||| ||||| ||||||||||| || ||||| |||||||||||| || |||||||||| ||||| |
|
|
| T |
38281701 |
gaagcttctgataagtgtcagagagaaaaaaggaaaacaattaatggtgatgatcttctttgggctatgacaac |
38281774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University