View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2814_low_9 (Length: 470)
Name: NF2814_low_9
Description: NF2814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2814_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 122 - 449
Target Start/End: Complemental strand, 29470172 - 29469845
Alignment:
| Q |
122 |
ttatcatgccatctctggcggttctacatacattggcttaaattagtgtggaattaacatgcaaaccgtgaacaatatcgtggccaaaggactaacaaag |
221 |
Q |
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| T |
29470172 |
ttatcatgccatctctggcggttctacatacattggcttcaattagtgtgaaattaacatacaaaccgtgaacaatatcgtggccaaaggactaacaatg |
29470073 |
T |
|
| Q |
222 |
aattgtgcatgagactaaaatcaagaaccatgatttgccacataaaaggaatcagaattcaaggcacgatgcttgaaggggcaatttgtgacatgttcag |
321 |
Q |
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| T |
29470072 |
aattgtgcattagactaaaatcaagaaccatgatttgccacataaaaggaatcaaaattcaaagcacaatgcttgaaggggcactctgttacatgttcag |
29469973 |
T |
|
| Q |
322 |
ctgacatcacaatttggatatccttcacggtaaaggacgcattcccttccaagttccaagcctactgccaattcattggatcattggattatggctttgg |
421 |
Q |
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| T |
29469972 |
ctgacatcacaatttggatatccttcacggtgaaggacgcattcccttccaagtttcaagcttacttccaattcattggatcattggattatggctttgg |
29469873 |
T |
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| Q |
422 |
tacaaccttctttctcttataggcccgt |
449 |
Q |
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| T |
29469872 |
tacaaccttctttctcttataggcccgt |
29469845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 4 - 361
Target Start/End: Complemental strand, 29462516 - 29462152
Alignment:
| Q |
4 |
acatcctattctttgcataaccttcaaatgtacaattttcatctaagtaactatttagcaattacaactccatctacatgtatgcaaaacaaaacattat |
103 |
Q |
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| T |
29462516 |
acatcctattctttacataaccttcaaatgtacaattttcatttaagtgactatttagcaattacaactccatctacatgtatgcaaaacaaaacattat |
29462417 |
T |
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| Q |
104 |
tttctacaacagtgacacttatcatgccatctctggcggttctacatacattggcttaaattagtgtggaattaac-------atgcaaaccgtgaacaa |
196 |
Q |
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| T |
29462416 |
tttctacaacagtaacacttatcatgccatctctagcagttctacatacataggcttaaattagtgtgaaattaacatgaataatgcaaaccgtgaacaa |
29462317 |
T |
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| Q |
197 |
tatcgtggccaaaggactaacaaagaattgtgcatgagactaaaatcaagaaccatgatttgccacataaaaggaatcagaattcaaggcacgatgcttg |
296 |
Q |
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| T |
29462316 |
tatcgtgaccaaaggactaacaaagaattgtgcattagaataaaatcaagaaccatgatctgcctcataaagggaatcaaaattcaaggcacgttgcttg |
29462217 |
T |
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| Q |
297 |
aaggggcaatttgtgacatgttcagctgacatcacaatttggatatccttcacggtaaaggacgc |
361 |
Q |
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| T |
29462216 |
atggggcaccttgtgacatgtttagttgacatcacaatttggatatccttcgcggtgaaggacgc |
29462152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 29479022 - 29478900
Alignment:
| Q |
1 |
attacatcctattctttgcataaccttcaaatgtacaattttcatctaagtaactatttagcaattacaactccatctacatgtatgcaaaacaaaacat |
100 |
Q |
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| T |
29479022 |
attacatcatattctttacataaccttcaaatgtacaattttcatctaagtaactatttagcaattacaactccatctacatgtatgcaaaacaaaacat |
29478923 |
T |
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| Q |
101 |
tattttctacaacagtgacactt |
123 |
Q |
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| T |
29478922 |
tattttctacaacagtgacactt |
29478900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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