View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2815_high_1 (Length: 946)
Name: NF2815_high_1
Description: NF2815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2815_high_1 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 843; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 843; E-Value: 0
Query Start/End: Original strand, 19 - 946
Target Start/End: Original strand, 2271962 - 2272892
Alignment:
| Q |
19 |
gtatgtaatgcttttgtatttactggcttcctgcgtttctggtttgattttatgggatgagggctgcttcctggtgttctcggtcgtctatgattttttg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2271962 |
gtatgtaatgcttttgtatttactggcttcctgcgtttctggtttgattttatgggatgagggctgcttcctggtgttctcggtcgtctatgattttttg |
2272061 |
T |
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| Q |
119 |
caaactagttttgggcttatttttgctccctgaagccaattgtcctgcaattctnnnnnnnnnnnnnnnnnnnnnnagattaatatttgagtattaggag |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
2272062 |
caaactagttttgggcttatttttgctccctgaagccaattgtcctgcaattctgggggtggggggagggttggggagattaatatttgagtattaggag |
2272161 |
T |
|
| Q |
219 |
gttgttattactatgtttctttgtactgatttggcgaaaaatgtagactatatatgcttcttaaattctcacagttataacactaacattgtatttatgt |
318 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2272162 |
gttgttattactatgtttctttgtactgatttggctaaaaatgtagactatatatgcttcttaaattctcacagttataacactaacattgtatttatgt |
2272261 |
T |
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| Q |
319 |
caactgttttcaaatacagtggtgtattttgcatcctgatttggctggtgctgttgactatgcttgtagtttatcaaattgtactacattgggatatggt |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2272262 |
caactgttttcaaatacagtggtgtattttgcatcctgatttggctggtgctgttgactatgcttgtagtttatcaaattgtactacattgggatatggt |
2272361 |
T |
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| Q |
419 |
tcttgtaatggtttgagtcttcttgtgcatttaatatgtattgtcaagtgaataatcagaaaggattggaattgagacttctctggtttggctattttac |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2272362 |
tcttgtaatggtttgagtcttcttgtgcatttaatatgtattgtcaagtgaataatcagaaaggattggaattgagacttctctggtttggctattttac |
2272461 |
T |
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| Q |
519 |
agatcatgattcatgatccatcagaaagttttgctcaaggattcacacaaatccaagaggaatctatctgtttaattcatctgactagtttataattatt |
618 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2272462 |
agatcatgattcatgatccatcagaaagttttgctcaaggattcacacaaatccaagaggaatctatctgtttaattcatctgactagtttataattatt |
2272561 |
T |
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| Q |
619 |
gaattgacggtggaaattgattcatctttatcctcgctctaggaatgtagaataatttacgagatttggctcggtgtctaattttaccattctttttcat |
718 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2272562 |
gaattgacggtggaaattgattcatctttatcctcgctctaggaatgtagaataatttacgagatttggctcggtgtctaattttaccattctttttcat |
2272661 |
T |
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| Q |
719 |
aaatagcagaagaatgaataatgtttaaggacagacttaatgttcgtgtccaagacaaagtgaatatatgttgatgttcatatcagtttattaatttgaa |
818 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2272662 |
aaatagcagaagaatgaataatgcttaaggacagacttaatgttcgtgtccaagacaaagtgaatatatgttgatgttcatatcagtttattaatttgaa |
2272761 |
T |
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| Q |
819 |
ttgtctagcttttcaattggttctgtgtgcttcactgcaacattatttatttcctccaaatggacattg---ttttgttccatgtattgcttcccatatt |
915 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
2272762 |
ttgtctagcttttcaattggttctgtgtgcttcactgcaacattatttatttcctccaaatggacattgtttttttgttccatgtattgcttcccatatt |
2272861 |
T |
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| Q |
916 |
ttgcttcactgtgttaattgatcaatgtggt |
946 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
2272862 |
ttgcttcactgtgttaattgatcaatgtggt |
2272892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 589 - 663
Target Start/End: Complemental strand, 40772552 - 40772478
Alignment:
| Q |
589 |
tttaattcatctgactagtttataattattgaattgacggtggaaattgattcatctttatcctcgctctaggaa |
663 |
Q |
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| T |
40772552 |
tttaatccatctgactagtttacagttattgaattgacaatggaaattgattcctctttattctcgctttaggaa |
40772478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 357 - 513
Target Start/End: Original strand, 46353776 - 46353947
Alignment:
| Q |
357 |
atttggctggtgctgttgactatgcttgtagtttatcaaattgtactacattgggatatgg---ttcttgtaatggtttgagtctt-------------c |
440 |
Q |
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||||||||||| | |||| ||||| ||||| |||||| |||||||| |||| |||||||| |||||||||||||||||||||| | |
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| T |
46353776 |
atttggctggtagtattgattatgcatgtagcttatcagattgtactgcattaggatatggatcttcttgtaatggtttgagtcttgaagggaatgcttc |
46353875 |
T |
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| Q |
441 |
ttgtgcatttaatatgtattgtcaagtgaataatcagaaaggattggaattgagacttctctggtttggctat |
513 |
Q |
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| T |
46353876 |
ttatgcatttaatatgtattatcaagtgcataatcag-aaggattgggattgtgatttttcaggtttggctat |
46353947 |
T |
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