View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2815_high_11 (Length: 245)
Name: NF2815_high_11
Description: NF2815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2815_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 26752711 - 26752483
Alignment:
| Q |
1 |
gaaaacgctcaacactttcccttctcaaaactggaaacctcgtcttaacagatgcagctcagtccattgtttggtccactgaaaccacctcaacaaaacc |
100 |
Q |
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| T |
26752711 |
gaaaacgctcaacactttcccttctcaaaactggaaacctcgtcttaacagatgcagctcagtccattgtttggtccactgaaaccacctcaacaaaacc |
26752612 |
T |
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| Q |
101 |
acttgaactactattacaggaaacaggtaaccttgttcttcaagaacaaagcagaaatggttcaagaaaaaacaatattctatggcaaagttttgacttc |
200 |
Q |
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| T |
26752611 |
acttgaactactattacatgaaacaggtaaccttgttcttcaagaacaaagcagaaatggttcaagaaaaaacaatattctatggcaaagttttgacttc |
26752512 |
T |
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| Q |
201 |
ccaacagatacacttttacccgaccaaac |
229 |
Q |
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| T |
26752511 |
ccaacagatacacttttacctgaccaaac |
26752483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 26677148 - 26677070
Alignment:
| Q |
1 |
gaaaacgctcaacactttcccttctcaaaactggaaacctcgtcttaacagatgcagctcagtccattgtttggtccac |
79 |
Q |
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||||||||||||||||||||||||||||||| || |||||||||||||| ||||||| || |||| ||| |||||||| |
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| T |
26677148 |
gaaaacgctcaacactttcccttctcaaaaccggcaacctcgtcttaaccgatgcaggacattccaatgtatggtccac |
26677070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 26688942 - 26689020
Alignment:
| Q |
1 |
gaaaacgctcaacactttcccttctcaaaactggaaacctcgtcttaacagatgcagctcagtccattgtttggtccac |
79 |
Q |
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| T |
26688942 |
gaaaacgctcaacactttcccttctcaaaaccggcaacctcgtcttaaccgatgcaggacattccaatgtatggtccac |
26689020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 26745768 - 26745690
Alignment:
| Q |
1 |
gaaaacgctcaacactttcccttctcaaaactggaaacctcgtcttaacagatgcagctcagtccattgtttggtccac |
79 |
Q |
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|||||||||||||||||||||||||||||||||| |||||| | ||||| || |||| |||| || ||||||||||| |
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| T |
26745768 |
gaaaacgctcaacactttcccttctcaaaactggcaacctcattttaaccgacgcaggacagttcaacgtttggtccac |
26745690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 26700321 - 26700265
Alignment:
| Q |
1 |
gaaaacgctcaacactttcccttctcaaaactggaaacctcgtcttaacagatgcag |
57 |
Q |
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| T |
26700321 |
gaaaacgctcaacactttcccttcttaaaaccggcaaccttgtattaaccgatgcag |
26700265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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