View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2815_high_14 (Length: 238)

Name: NF2815_high_14
Description: NF2815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2815_high_14
NF2815_high_14
[»] chr7 (2 HSPs)
chr7 (1-237)||(6583065-6583307)
chr7 (1-238)||(6568905-6569148)
[»] chr3 (2 HSPs)
chr3 (76-183)||(45013872-45013979)
chr3 (153-238)||(43490103-43490188)
[»] chr8 (1 HSPs)
chr8 (145-186)||(38653171-38653212)
[»] chr6 (1 HSPs)
chr6 (85-168)||(10554679-10554762)
[»] chr4 (1 HSPs)
chr4 (146-182)||(1726256-1726292)
[»] chr2 (1 HSPs)
chr2 (145-181)||(15403640-15403676)


Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 6583307 - 6583065
Alignment:
Q  1 ttgttgatcatgagaattagaaacataaccactttgttgaattgcactattagcactagagct------gttgcattgaacaactctttcagggaaatta 94  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||      |||||||||||||||||||||||||||||||    
T  6583307 ttgttgatcatgagaattagaaacagaaccactttgttgaattgcactattagcactagaactataactgttgcattgaacaactctttcagggaaatta 6583208  T
Q  95 agcttagcttttgtgcctttgaatttgaatgcagctttgtcatatgcaagagctgcatcttcagctgtgtcaaatgttcctaaccatactctagctgcnn 194  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||      
T  6583207 agcttagcttttgtgcctttgaatttgaatgcagctttgtcatatgcaagagctgcatcttcagctgtgtcaaatgttcctaaccaaactctagctgctt 6583108  T
Q  195 nnnnngggtcacgtatttcagctgcccattttccccatggtct 237  Q
         ||||||||||||||||||||||||||||||||||||||    
T  6583107 tttttgggtcacgtatttcagctgcccattttccccatggtct 6583065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 6569148 - 6568905
Alignment:
Q  1 ttgttgatcatgagaattagaaacataaccactttgttgaattgcactattagcactagagct------gttgcattgaacaactctttcagggaaatta 94  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||| ||      |||||||||||||||||||||||||||||||    
T  6569148 ttgttgatcatgagaattagaaacataatcactttgttgaattgcattattagcagtagaactataactgttgcattgaacaactctttcagggaaatta 6569049  T
Q  95 agcttagcttttgtgcctttgaatttgaatgcagctttgtcatatgcaagagctgcatcttcagctgtgtcaaatgttcctaaccatactctagctgcnn 194  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||      
T  6569048 agcttagcttttgtgcctttgaatttgagtgcagctttgtcatatgcaagagctgcatcttcagctgtatcaaatgttcctaaccaaactctagctgctt 6568949  T
Q  195 nnnnngggtcacgtatttcagctgcccattttccccatggtctc 238  Q
         |||||||||||||||||||||||||||||||||||||||    
T  6568948 tttttgggtcacgtatttcagctgcccattttccccatggtctc 6568905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 76 - 183
Target Start/End: Original strand, 45013872 - 45013979
Alignment:
Q  76 aactctttcagggaaattaagcttagcttttgtgcctttgaatttgaatgcagctttgtcatatgcaagagctgcatcttcagctgtgtcaaatgttcct 175  Q
    |||||||||||| ||||| |||||||||||  | ||||||||| ||| ||||||||  ||||||||||  |||||| | ||||| || ||||||||||||    
T  45013872 aactctttcaggaaaattgagcttagctttgcttcctttgaatctgagtgcagcttcatcatatgcaacggctgcagcctcagccgtttcaaatgttcct 45013971  T
Q  176 aaccatac 183  Q
    | ||||||    
T  45013972 agccatac 45013979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 153 - 238
Target Start/End: Original strand, 43490103 - 43490188
Alignment:
Q  153 cttcagctgtgtcaaatgttcctaaccatactctagctgcnnnnnnngggtcacgtatttcagctgcccattttccccatggtctc 238  Q
    |||||||||| ||||||||||||||||||||||| |||||       || || | ||| || ||||||||||||||||||||||||    
T  43490103 cttcagctgtttcaaatgttcctaaccatactcttgctgctttgaatggatctcttatctctgctgcccattttccccatggtctc 43490188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 186
Target Start/End: Original strand, 38653171 - 38653212
Alignment:
Q  145 agctgcatcttcagctgtgtcaaatgttcctaaccatactct 186  Q
    |||||||||||||||||| |||||||| ||||||||||||||    
T  38653171 agctgcatcttcagctgtttcaaatgtacctaaccatactct 38653212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 168
Target Start/End: Complemental strand, 10554762 - 10554679
Alignment:
Q  85 agggaaattaagcttagcttttgtgcctttgaatttgaatgcagctttgtcatatgcaagagctgcatcttcagctgtgtcaaa 168  Q
    ||||||||||||||| |||||  | ||||||||| | ||||||||||  ||||| |||  ||||||| |||||||||| |||||    
T  10554762 agggaaattaagcttggctttgtttcctttgaatctcaatgcagcttcatcataagcagtagctgcagcttcagctgtttcaaa 10554679  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 182
Target Start/End: Complemental strand, 1726292 - 1726256
Alignment:
Q  146 gctgcatcttcagctgtgtcaaatgttcctaaccata 182  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  1726292 gctgcatcttctgctgtttcaaatgttcctaaccata 1726256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 181
Target Start/End: Complemental strand, 15403676 - 15403640
Alignment:
Q  145 agctgcatcttcagctgtgtcaaatgttcctaaccat 181  Q
    |||||| |||||||||||||||||||| |||||||||    
T  15403676 agctgcttcttcagctgtgtcaaatgtacctaaccat 15403640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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