View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2815_high_3 (Length: 637)
Name: NF2815_high_3
Description: NF2815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2815_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 245
Target Start/End: Original strand, 5690908 - 5691135
Alignment:
| Q |
18 |
aagtgaagggtgtgaaagcaggtgagggggtgagaaaggatcttggggtggtggcaaaagcagttggtttaacaaaggaagatggaatagttctcaatgc |
117 |
Q |
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| T |
5690908 |
aagtgaagggtgtgaaagcagatgagggggtgagaaaggatcttggggtggtggcaaaagcagttggtctaacaaaggacgatggaatagttctcaaagc |
5691007 |
T |
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| Q |
118 |
ataggttgaagaggccattgttgttagatgatagaataaaattgcttagttatattgtttgttgattcttactagcttgtgtgatgaataaaatatgcaa |
217 |
Q |
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| T |
5691008 |
atagcttgaagaggccattgttgttagatgatagaataaaattgcttagttatattgtttgttgattcttactagcttgtgtgatgaataaaatatgcaa |
5691107 |
T |
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| Q |
218 |
tggtgatttatatatatagggaagatat |
245 |
Q |
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| T |
5691108 |
tggtgatttatatatatagtgaagatat |
5691135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 242 - 435
Target Start/End: Original strand, 5691169 - 5691362
Alignment:
| Q |
242 |
atatggacggtggattagaaaattgaagtgtgaatcatgttgtgaaatgtgaaataataatggaaaagaaaatgggtcagtcaaagggtcaataatgtgg |
341 |
Q |
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| T |
5691169 |
atatggacggtggattagaaaattgaagtgtgaatcatgttgtgaaatgtgaaataatattggaaaataaaacgggtcagtcaaagggtcaataatgtgg |
5691268 |
T |
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| Q |
342 |
tggtggacggtacatttagtactgcttcaacattttcttccgttgggagaatgatacatcatcttttcaagagggtttaatggaagtcgataaa |
435 |
Q |
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| T |
5691269 |
tggtggacggtatatttagtactgcttcaacattttcttccgttgggaaaatgatacatcatcttttcaagagggtttaatggaagttgataaa |
5691362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 80; Significance: 3e-37; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 28 - 139
Target Start/End: Original strand, 26248979 - 26249090
Alignment:
| Q |
28 |
tgtgaaagcaggtgagggggtgagaaaggatcttggggtggtggcaaaagcagttggtttaacaaaggaagatggaatagttctcaatgcataggttgaa |
127 |
Q |
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| T |
26248979 |
tgtgaaagcagatgagggtgtgaggaacgatttcggggtggtggcaaaagcagttggtttaacaaaggaagatggaatagttctcaaagcatagcttgaa |
26249078 |
T |
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| Q |
128 |
gaggccattgtt |
139 |
Q |
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| T |
26249079 |
gaggccattgtt |
26249090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 171 - 245
Target Start/End: Original strand, 26249085 - 26249159
Alignment:
| Q |
171 |
attgtttgttgattcttactagcttgtgtgatgaataaaatatgcaatggtgatttatatatatagggaagatat |
245 |
Q |
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| T |
26249085 |
attgtttgttgattcttactagcttgtgtgatgaataatataagcaatggtgatttatatatatagtgaagatat |
26249159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 330 - 380
Target Start/End: Complemental strand, 26248507 - 26248457
Alignment:
| Q |
330 |
tcaataatgtggtggtggacggtacatttagtactgcttcaacattttctt |
380 |
Q |
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| T |
26248507 |
tcaatgatgtggtggtggacggtacatttagtactgcttcaacattttctt |
26248457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 365 - 426
Target Start/End: Original strand, 26249327 - 26249388
Alignment:
| Q |
365 |
gcttcaacattttcttccgttgggagaatgatacatcatcttttcaagagggtttaatggaa |
426 |
Q |
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| T |
26249327 |
gcttctacattttcttccgttgggaaattggaacatcatcttttcaagagagtttaatggaa |
26249388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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