View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2815_low_11 (Length: 394)
Name: NF2815_low_11
Description: NF2815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2815_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 23 - 385
Target Start/End: Complemental strand, 54161896 - 54161522
Alignment:
| Q |
23 |
gctactttcgctgccggaaactctgtcaaggatgttccgccagtattgactcccaccatcctgcctaaaagcatgtctcccgacagtgtgccattcacaa |
122 |
Q |
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| T |
54161896 |
gctactttcgctgccggaaactctgtcaaggatgttccgccggtattgactcccaccatcctgcctaaaagcatgtctcccgacggggtgccattcacaa |
54161797 |
T |
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| Q |
123 |
tcatcgacacctcttcccggtaacgattccttgctgtttaattgtaattgtaactctaagcgagggaggattttacatatttatgctaaaactgttaatc |
222 |
Q |
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| T |
54161796 |
tcatcgacacctcttcccggtaacgattccttgctgtttaattgtaattgtaactctaagcgagggaggattttacatatttatgctaaaactgttcatc |
54161697 |
T |
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| Q |
223 |
gcttttcataagctcttgtgttagctatacgttacaaatttgaatgtttaccctaa---caatgtctacgtaatttcacttcatcttg---------ttg |
310 |
Q |
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|||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||| | ||||||||||||||||| ||| |
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| T |
54161696 |
gcttttcataagctcttgtgctagctataagttacaaatttgaatgtttaccctaatctgaatgtctaaggaatttcacttcatcttgttgttgttattg |
54161597 |
T |
|
| Q |
311 |
ttgttgcagtcctgtggacagtgataaagttgatgaagaactattggcagctgacgtaatcatcctcacctatgc |
385 |
Q |
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|||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
54161596 |
ttgttgtagtcctgaggacagtgataaagttgatgaagaactattggctgctgacgtaatcatcctcacctatgc |
54161522 |
T |
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