View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2815_low_12 (Length: 371)
Name: NF2815_low_12
Description: NF2815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2815_low_12 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Complemental strand, 2268331 - 2267959
Alignment:
| Q |
1 |
aaagcaacaataaactaagaccaggaaagcaactaacaaaaggaaagnnnnnnnnn--catgaccagacaaatgcaatcaagagttaattaaaaatgcaa |
98 |
Q |
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| T |
2268331 |
aaagcaacaataaactaagaccaggaaagcaactaacaaaaggaaagaaaaaaaaaaacatgaccagacaaatgcaatcaagagttaattaaaaatgcaa |
2268232 |
T |
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| Q |
99 |
agttctagttatatcaatcacatgaacaagtgtgaagaaatcaagtatctaagttaattcccaacattactatcaattagaatgtcattatagaaatttt |
198 |
Q |
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| T |
2268231 |
agttctagttatatcaatcacatgaacaagtgtgaagaaatcaagtatctaagttaattcccaacattactatcaattacaatgtcattatagaaatttt |
2268132 |
T |
|
| Q |
199 |
actagttaccgaagagcaaatgtgaagaatagttatgcaagggtaattatgaatagttatagatattatagtggaaaccagcatctacagctcttacggt |
298 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2268131 |
actagttaccaaagagcaaatgtgaagaatagttatgcaagggtaattatgaatagttatagatattatagtggaaaccagcatctacagctcttacggt |
2268032 |
T |
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| Q |
299 |
acatggcttagactcagccctgtcattctattgtaggtgcaggctattacaatatgcaactatcaccagaact |
371 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2268031 |
gcatggcttagactcagccctgtcattctattgtaggtgcaggctattacaatatgcaactatcaccagaact |
2267959 |
T |
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