View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2815_low_14 (Length: 277)
Name: NF2815_low_14
Description: NF2815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2815_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 7445706 - 7445966
Alignment:
| Q |
1 |
aagccttaacgttgtctccaaaaaccaaggataacacatctcaatctcattactcattcttttaattaggatagcaagtgagtgttattagaaacaaaga |
100 |
Q |
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| T |
7445706 |
aagccttaacgttgtctccaaaaaacaaggataacacatctcaatctcattactcattcttttaattaggatagcaagtgagtgttattagaaacaaaga |
7445805 |
T |
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| Q |
101 |
gagattgagacagttagtaacaaaagacacaaaaatataacaatgaatcatcatcaagaccaaatgatgcttatgtctcagttattcccagcttgtgaat |
200 |
Q |
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| T |
7445806 |
gagattgagacagttagtaacaaaagacacaaaaatataacaatga---atcatcaagaccaaatgatgcttatgtctcagttattcccagcttgtgaat |
7445902 |
T |
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| Q |
201 |
acacccaaatcatttctcaacaaggttagtatcatattaaattaatacataacattttatatgt |
264 |
Q |
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| T |
7445903 |
acacccaaatcatttctcaacaaggttagcatcatattaaattaatacataacattttatatgt |
7445966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 66 - 264
Target Start/End: Original strand, 7460715 - 7460910
Alignment:
| Q |
66 |
ttaggatagcaagtgagtgttattagaaacaaagagagattgagacagttagtaacaaaagacacaaaaatataacaatgaatcatcatcaagaccaaat |
165 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
7460715 |
ttaggatagcaagtgagtgttattagaaacaaagagagattgagacagttagtaacaaaagacacaaaaatataacaatgaatca---tcaagaccaaat |
7460811 |
T |
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| Q |
166 |
gatgcttatgtctcagttattcccagcttgtgaatacacccaaatcatttctcaacaaggttagtatcatattaaattaatacataacattttatatgt |
264 |
Q |
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| T |
7460812 |
gatgcttatgtctcagttattcccagcttgtgaatacacccaaatcatttctcaacaaggttagtatcatattaaattaatacataacattttatatgt |
7460910 |
T |
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