View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2815_low_15 (Length: 265)

Name: NF2815_low_15
Description: NF2815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2815_low_15
NF2815_low_15
[»] chr1 (13 HSPs)
chr1 (1-245)||(25885539-25885783)
chr1 (1-233)||(25886752-25886984)
chr1 (1-233)||(25604588-25604821)
chr1 (81-265)||(25604402-25604587)
chr1 (81-265)||(25886565-25886751)
chr1 (60-265)||(25482742-25482953)
chr1 (60-265)||(25861082-25861293)
chr1 (156-265)||(25885428-25885538)
chr1 (1-86)||(25482656-25482741)
chr1 (1-86)||(25861294-25861379)
chr1 (1-86)||(25604869-25604954)
chr1 (1-86)||(25887032-25887117)
chr1 (81-146)||(25884623-25884688)


Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 25885539 - 25885783
Alignment:
Q  1 ggtttgcaacccttttgctgctatgaaagaaaaggaaagtaagttcgtaatgaccaaaccgcttgttgctgagaagtgtcctgtgacatctgactcgctt 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25885539 ggtttgcaacccttttgctgctaagaaagaaaaggaaagtaagttcgtaatgaccaaaccgcttgttgctgagaagtgtcctgtgacatctgactcgctt 25885638  T
Q  101 tttgtgatgtttgacccgtttcttgttgaaagtaagtttgtgccttannnnnnnnaaaacattcatccatattaaaaaatggtcaccctttggcatttta 200  Q
    |||||||||| ||||||| |||||| |||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||| |||    
T  25885639 tttgtgatgtctgacccgcttcttgctgaaagtaagtttgtgccttattttttttaaaacattcatccatattaaaaaatggtcaccctttggcatctta 25885738  T
Q  201 tttgatgaaaaatgaacaggagttactaagaggatagaggaagag 245  Q
    |||||||||||||||||||||||| |||||||| |||||||||||    
T  25885739 tttgatgaaaaatgaacaggagttgctaagagggtagaggaagag 25885783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 25886752 - 25886984
Alignment:
Q  1 ggtttgcaacccttttgctgctatgaaagaaaaggaaagtaagttcgtaatgaccaaaccgcttgttgctgagaagtgtcctgtgacatctgactcgctt 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||| |||||||||    
T  25886752 ggtttgcaacccttttgctgctaagaaagaaaaggaaagtaagttcgtaatgaccaaaccacttgttgctgagaagcgtcctctgacatccgactcgctt 25886851  T
Q  101 tttgtgatgtttgacccgtttcttgttgaaagtaagtttgtgccttannnnnnnnaaaacattcatccatattaaaaaatggtcaccctttggcatttta 200  Q
    |||||||||| |||||||||||||| |||||||||||||||||||||        ||||||||||||||||||||||||| ||||| ||||||  | |||    
T  25886852 tttgtgatgtctgacccgtttcttgctgaaagtaagtttgtgccttattttttttaaaacattcatccatattaaaaaattgtcactctttggtgtctta 25886951  T
Q  201 tttgatgaaaaatgaacaggagttactaagagg 233  Q
    |||||||||||||||||||||||| ||||||||    
T  25886952 tttgatgaaaaatgaacaggagttgctaagagg 25886984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 25604588 - 25604821
Alignment:
Q  1 ggtttgcaacccttttgctgctatgaaagaaaaggaaagtaagttcgtaatgaccaaaccgcttgttgctgagaagtgtcctgtgacatctgactcgctt 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||| |||||||||    
T  25604588 ggtttgcaacccttttgctgctaagaaagaaaaggaaagtaagttcgtaatgaccaaaccacttgttgctgagaagcgtcctatgacatccgactcgctt 25604687  T
Q  101 tttgtgatgtttgacccgtttcttgttgaaagtaagtttgtgccttannnnnnnnaaaacattcatccatattaa-aaaatggtcaccctttggcatttt 199  Q
    |||||||||| |||||||||||||| |||||||||||||||| ||||        |||||||||||||||||||| ||||||||||| ||||||  | ||    
T  25604688 tttgtgatgtctgacccgtttcttgctgaaagtaagtttgtgtcttattttttttaaaacattcatccatattaacaaaatggtcactctttggtgtctt 25604787  T
Q  200 atttgatgaaaaatgaacaggagttactaagagg 233  Q
    ||||||||||||||||||||||||| ||||||||    
T  25604788 atttgatgaaaaatgaacaggagttgctaagagg 25604821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 81 - 265
Target Start/End: Original strand, 25604402 - 25604587
Alignment:
Q  81 ctgtgacatctgactcgctttttgtgatgtttgacccgtttcttgttgaaagtaagtttgtgccttannnnnnnnaaaacattcatccatattaa-aaaa 179  Q
    |||||||||| | | |||||||||||| || |||||||||||||| |||||||||||||||||||||        |||||||||||||||||||| ||||    
T  25604402 ctgtgacatccggcacgctttttgtgacgtctgacccgtttcttgctgaaagtaagtttgtgccttattttttttaaaacattcatccatattaacaaaa 25604501  T
Q  180 tggtcaccctttggcattttatttgatgaaaaatgaacaggagttactaagaggatagaggaagagtctcttgagacgacctatcc 265  Q
    |||||||||||||| || |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||    
T  25604502 tggtcaccctttggtatcttatttgatgaaaaatgaacaggaattactaagaggctagaggaagagtctcttgagacgaccaatcc 25604587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 81 - 265
Target Start/End: Original strand, 25886565 - 25886751
Alignment:
Q  81 ctgtgacatctgactcgctttttgtgatgtttgacccgtttcttgttgaaagtaagtttgtgccttannnnnnnn-aaaacattcatccatattaa-aaa 178  Q
    |||||||||| | | ||||||||||||||| |||||||||||||| |||||||||||||||||||||         |||||||||||||||||||| |||    
T  25886565 ctgtgacatccggcacgctttttgtgatgtctgacccgtttcttgctgaaagtaagtttgtgccttatttttttataaaacattcatccatattaacaaa 25886664  T
Q  179 atggtcaccctttggcattttatttgatgaaaaatgaacaggagttactaagaggatagaggaagagtctcttgagacgacctatcc 265  Q
    ||||||||||||||| || |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||    
T  25886665 atggtcaccctttggtatcttatttgatgaaaaatgaacaggatttactaagaggctagaggaagagtctcttgagacgaccaatcc 25886751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 60 - 265
Target Start/End: Complemental strand, 25482953 - 25482742
Alignment:
Q  60 cgcttgttgctgagaagtgtcctgtgacatctgactcgctttttgtgatgtttgacccgtttcttgttgaaagtaagtttgtgccttannnnnnnn---- 155  Q
    ||||| |||||||| || ||||||||||||| ||| ||||||||||||||| |||||| ||||||| ||||||||||||| ||||||                 
T  25482953 cgcttcttgctgaggagcgtcctgtgacatccgacacgctttttgtgatgtctgacccatttcttgctgaaagtaagtttctgccttgttattttttttt 25482854  T
Q  156 --aaaacattcatccatattaaaaaatggtcaccctttggcattttatttgatgaaaaatgaacaggagttactaagaggatagaggaagagtctcttga 253  Q
      |||||||||| ||||||||| ||||||||||||||||| || ||||||||||||||||||| ||||||| |||||||| ||||||||||| |||||||    
T  25482853 ttaaaacattcacccatattaataaatggtcaccctttggtatcttatttgatgaaaaatgaataggagttgctaagagggtagaggaagagcctcttga 25482754  T
Q  254 gacgacctatcc 265  Q
    ||||||| ||||    
T  25482753 gacgaccaatcc 25482742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 60 - 265
Target Start/End: Original strand, 25861082 - 25861293
Alignment:
Q  60 cgcttgttgctgagaagtgtcctgtgacatctgactcgctttttgtgatgtttgacccgtttcttgttgaaagtaagtttgtgccttannnnnnnn---- 155  Q
    ||||| |||||||| || ||||||||||||| ||| ||||||||||||||| |||||| ||||||| ||||||||||||| ||||||                 
T  25861082 cgcttcttgctgaggagcgtcctgtgacatccgacacgctttttgtgatgtctgacccatttcttgctgaaagtaagtttctgccttgttattttttttt 25861181  T
Q  156 --aaaacattcatccatattaaaaaatggtcaccctttggcattttatttgatgaaaaatgaacaggagttactaagaggatagaggaagagtctcttga 253  Q
      |||||||||| ||||||||| ||||||||||||||||| || ||||||||||||||||||| ||||||| |||||||| ||||||||||| |||||||    
T  25861182 ttaaaacattcacccatattaataaatggtcaccctttggtatcttatttgatgaaaaatgaataggagttgctaagagggtagaggaagagcctcttga 25861281  T
Q  254 gacgacctatcc 265  Q
    ||||||| ||||    
T  25861282 gacgaccaatcc 25861293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 156 - 265
Target Start/End: Original strand, 25885428 - 25885538
Alignment:
Q  156 aaaacattcatccatattaa-aaaatggtcaccctttggcattttatttgatgaaaaatgaacaggagttactaagaggatagaggaagagtctcttgag 254  Q
    |||||||||||||||||||| |||||||||||||||||| || |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  25885428 aaaacattcatccatattaataaaatggtcaccctttggtatcttatttgatgaaaaatgaaccggagttactaagaggctagaggaagagtctcttgag 25885527  T
Q  255 acgacctatcc 265  Q
    |||||||||||    
T  25885528 acgacctatcc 25885538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 25482741 - 25482656
Alignment:
Q  1 ggtttgcaacccttttgctgctatgaaagaaaaggaaagtaagttcgtaatgaccaaaccgcttgttgctgagaagtgtcctgtga 86  Q
    |||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||    
T  25482741 ggtttgcaacccttttcctgctaagaaagaaaaggaaagtaagttcgtaaggaccaaaccgcttgttgctgagaagcatcctgtga 25482656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 25861294 - 25861379
Alignment:
Q  1 ggtttgcaacccttttgctgctatgaaagaaaaggaaagtaagttcgtaatgaccaaaccgcttgttgctgagaagtgtcctgtga 86  Q
    |||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||    
T  25861294 ggtttgcaacccttttcctgctaagaaagaaaaggaaagtaagttcgtaaggaccaaaccgcttgttgctgagaagcatcctgtga 25861379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 25604869 - 25604954
Alignment:
Q  1 ggtttgcaacccttttgctgctatgaaagaaaaggaaagtaagttcgtaatgaccaaaccgcttgttgctgagaagtgtcctgtga 86  Q
    |||||||||||||||| |||||| |||||||||||| ||||||||||||| ||||||||||| |||||||||||||  ||||||||    
T  25604869 ggtttgcaacccttttcctgctaagaaagaaaaggagagtaagttcgtaaggaccaaaccgcgtgttgctgagaagcatcctgtga 25604954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 25887032 - 25887117
Alignment:
Q  1 ggtttgcaacccttttgctgctatgaaagaaaaggaaagtaagttcgtaatgaccaaaccgcttgttgctgagaagtgtcctgtga 86  Q
    |||||||||||||||| |||||| |||||||||||| ||||||||||||| ||||||||||| |||||||||||||  ||||||||    
T  25887032 ggtttgcaacccttttcctgctaagaaagaaaaggagagtaagttcgtaaggaccaaaccgcgtgttgctgagaagcatcctgtga 25887117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 81 - 146
Target Start/End: Original strand, 25884623 - 25884688
Alignment:
Q  81 ctgtgacatctgactcgctttttgtgatgtttgacccgtttcttgttgaaagtaagtttgtgcctt 146  Q
    |||||||||| | | ||||||||||||| | |||||| ||||||| ||||||||||||| ||||||    
T  25884623 ctgtgacatccggcacgctttttgtgatttctgacccatttcttgctgaaagtaagtttatgcctt 25884688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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