View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2815_low_16 (Length: 264)
Name: NF2815_low_16
Description: NF2815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2815_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 256
Target Start/End: Original strand, 28403832 - 28404070
Alignment:
| Q |
18 |
gttaatgctccgaggaagcctcgaattctacttggttgttgtggaagtgtagctgctatgaaatttggacttgtttttaatgctttttcagaatgggcag |
117 |
Q |
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| T |
28403832 |
gttaatgctccgaggaagcctcgaattctacttggttgttgtggaagtgtagctgctatgaaatttggacttgtttttaatgctttttcagaatgggcag |
28403931 |
T |
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| Q |
118 |
aagtaagagcagttgttacagaaacatctttgcaatttcttgttcatgagaaagcagaatcgttgttcacacacaggcatgacatatataaagacgattc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
28403932 |
aagtaagagcagttgttacagaaacatctttgcaatttcttgttcatgagaaagcagaatcattgttcacacacaggcatgacatatataaagacgattc |
28404031 |
T |
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| Q |
218 |
tgagtggaaaaattggaaaaagattggtgattctgtgct |
256 |
Q |
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| T |
28404032 |
tgagtggaaaaattggaaaaagataggtgattctgtgct |
28404070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 256
Target Start/End: Complemental strand, 28585964 - 28585726
Alignment:
| Q |
18 |
gttaatgctccgaggaagcctcgaattctacttggttgttgtggaagtgtagctgctatgaaatttggacttgtttttaatgctttttcagaatgggcag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28585964 |
gttaatgctccgaggaagcctcgaattctacttggttgttgtggaagtgtagctgctatgaaatttggacttgtttttaatgctttttcagaatgggcag |
28585865 |
T |
|
| Q |
118 |
aagtaagagcagttgttacagaaacatctttgcaatttcttgttcatgagaaagcagaatcgttgttcacacacaggcatgacatatataaagacgattc |
217 |
Q |
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| T |
28585864 |
aagtaagagcagttgttacagaaacatctttgcaatttcttgttcatgagaaagcagaatcattgttcacacacaggcatgacatatataaagacgattc |
28585765 |
T |
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| Q |
218 |
tgagtggaaaaattggaaaaagattggtgattctgtgct |
256 |
Q |
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| T |
28585764 |
tgagtggaaaaattggaaaaagataggtgattctgtgct |
28585726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 29 - 178
Target Start/End: Original strand, 28417400 - 28417549
Alignment:
| Q |
29 |
gaggaagcctcgaattctacttggttgttgtggaagtgtagctgctatgaaatttggacttgtttttaatgctttttcagaatgggcagaagtaagagca |
128 |
Q |
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|||||||||||| ||| |||||||| |||||||||||||||||| |||||||||||||||||| || |||||| ||||||||||||||||||| ||| |
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| T |
28417400 |
gaggaagcctcggattgtacttggtgcttgtggaagtgtagctgccatgaaatttggacttgttcttcgtgctttatcagaatgggcagaagtaaaagct |
28417499 |
T |
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| Q |
129 |
gttgttacagaaacatctttgcaatttcttgttcatgagaaagcagaatc |
178 |
Q |
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||||| ||| ||||| |||| |||||||||| | |||||||||||||||| |
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| T |
28417500 |
gttgtcacaaaaacagctttacaatttcttgctaatgagaaagcagaatc |
28417549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 122
Target Start/End: Original strand, 28419851 - 28419944
Alignment:
| Q |
29 |
gaggaagcctcgaattctacttggttgttgtggaagtgtagctgctatgaaatttggacttgtttttaatgctttttcagaatgggcagaagta |
122 |
Q |
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|||||||||||| ||| | ||||| ||||||||||||||||||||||||||| ||||| ||| || ||||||| ||||||||||||||| |
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| T |
28419851 |
gaggaagcctcggattgtgattggtgcttgtggaagtgtagctgctatgaaattcggactcgttcttcgtgcttttatggaatgggcagaagta |
28419944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 122
Target Start/End: Complemental strand, 28582339 - 28582246
Alignment:
| Q |
29 |
gaggaagcctcgaattctacttggttgttgtggaagtgtagctgctatgaaatttggacttgtttttaatgctttttcagaatgggcagaagta |
122 |
Q |
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|||||||||||| ||| | ||||| ||||||||||||||||||||||||||| ||||| ||| || ||||||| ||||||||||||||| |
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| T |
28582339 |
gaggaagcctcggattgtgattggtgcttgtggaagtgtagctgctatgaaattcggactcgttcttcgtgcttttatggaatgggcagaagta |
28582246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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