View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2815_low_2 (Length: 650)
Name: NF2815_low_2
Description: NF2815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2815_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 396; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 224 - 640
Target Start/End: Original strand, 18609265 - 18609681
Alignment:
| Q |
224 |
atggagacaacatccaagtgcccttgggaactaggggatggagggacatgttctaatctttttcattcttgataaattttcatcaaacctcttcattata |
323 |
Q |
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| T |
18609265 |
atggagacaacatccaagtgcccttgggaactaggggatggagggacatgttctaatctttttcattcttgataaattttcatcaaacctcttcattata |
18609364 |
T |
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| Q |
324 |
ctatcttctaaacctttacactcattaatttttgggtgaattgaagtcttttgactaaaagtactatcacaaatccttatgttcaagattaagtgaaaca |
423 |
Q |
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| T |
18609365 |
ctatcttctaaacctttacactcattaatttttgggtgaattgaagtcttttgactaaaagtactatcacaaatccttatgttcaagattaagtgaaaca |
18609464 |
T |
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| Q |
424 |
ctattctcacccatcttattagtttaataatataaatcttgaatcatagaagaaattttattcnnnnnnnttacatgatacttgtccctaatttcgggcg |
523 |
Q |
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| T |
18609465 |
ctattctcacccatcttattagtttaataatataaatcttgaatcatagaagaaattttattcaaaaaaattacatgatacttgtccctaatttcgggcg |
18609564 |
T |
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| Q |
524 |
gagagctttcgtgcaaccattggtattcgttttgtgccatatcttttgagggagaagaaatcttctattcgtttattcatcaaggcgcctccccacgaaa |
623 |
Q |
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| T |
18609565 |
gagagctttcgtgcaaccattggtattcgttttgtgccatatcttttgagggagaagaaatcttctattcgtttattcatcaaggcgcctccccacgaaa |
18609664 |
T |
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| Q |
624 |
atctatcatcacctttg |
640 |
Q |
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| T |
18609665 |
atctatcatcacctttg |
18609681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 20 - 139
Target Start/End: Original strand, 18609061 - 18609180
Alignment:
| Q |
20 |
ccatacaccccaacaagcgcctccatatgccccacgcgcatggttctggnnnnnnnntgcttagttgcttaatttgcaagttggatctatggaacaaaaa |
119 |
Q |
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| T |
18609061 |
ccatacaccccaacaagcgcctccatatgccccacgcgcatggttctggaaaaaaaatgcttagttgcttaatttgcaagttggatctatggaacaaaaa |
18609160 |
T |
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| Q |
120 |
cccgattctattttaaccta |
139 |
Q |
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| T |
18609161 |
cccgattctattttaaccta |
18609180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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