View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2815_low_22 (Length: 238)
Name: NF2815_low_22
Description: NF2815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2815_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 6583307 - 6583065
Alignment:
| Q |
1 |
ttgttgatcatgagaattagaaacataaccactttgttgaattgcactattagcactagagct------gttgcattgaacaactctttcagggaaatta |
94 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
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| T |
6583307 |
ttgttgatcatgagaattagaaacagaaccactttgttgaattgcactattagcactagaactataactgttgcattgaacaactctttcagggaaatta |
6583208 |
T |
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| Q |
95 |
agcttagcttttgtgcctttgaatttgaatgcagctttgtcatatgcaagagctgcatcttcagctgtgtcaaatgttcctaaccatactctagctgcnn |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
6583207 |
agcttagcttttgtgcctttgaatttgaatgcagctttgtcatatgcaagagctgcatcttcagctgtgtcaaatgttcctaaccaaactctagctgctt |
6583108 |
T |
|
| Q |
195 |
nnnnngggtcacgtatttcagctgcccattttccccatggtct |
237 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
6583107 |
tttttgggtcacgtatttcagctgcccattttccccatggtct |
6583065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 6569148 - 6568905
Alignment:
| Q |
1 |
ttgttgatcatgagaattagaaacataaccactttgttgaattgcactattagcactagagct------gttgcattgaacaactctttcagggaaatta |
94 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||| || ||||||||||||||||||||||||||||||| |
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| T |
6569148 |
ttgttgatcatgagaattagaaacataatcactttgttgaattgcattattagcagtagaactataactgttgcattgaacaactctttcagggaaatta |
6569049 |
T |
|
| Q |
95 |
agcttagcttttgtgcctttgaatttgaatgcagctttgtcatatgcaagagctgcatcttcagctgtgtcaaatgttcctaaccatactctagctgcnn |
194 |
Q |
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| T |
6569048 |
agcttagcttttgtgcctttgaatttgagtgcagctttgtcatatgcaagagctgcatcttcagctgtatcaaatgttcctaaccaaactctagctgctt |
6568949 |
T |
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| Q |
195 |
nnnnngggtcacgtatttcagctgcccattttccccatggtctc |
238 |
Q |
| |
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| T |
6568948 |
tttttgggtcacgtatttcagctgcccattttccccatggtctc |
6568905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 76 - 183
Target Start/End: Original strand, 45013872 - 45013979
Alignment:
| Q |
76 |
aactctttcagggaaattaagcttagcttttgtgcctttgaatttgaatgcagctttgtcatatgcaagagctgcatcttcagctgtgtcaaatgttcct |
175 |
Q |
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|||||||||||| ||||| ||||||||||| | ||||||||| ||| |||||||| |||||||||| |||||| | ||||| || |||||||||||| |
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| T |
45013872 |
aactctttcaggaaaattgagcttagctttgcttcctttgaatctgagtgcagcttcatcatatgcaacggctgcagcctcagccgtttcaaatgttcct |
45013971 |
T |
|
| Q |
176 |
aaccatac |
183 |
Q |
| |
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| |||||| |
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| T |
45013972 |
agccatac |
45013979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 153 - 238
Target Start/End: Original strand, 43490103 - 43490188
Alignment:
| Q |
153 |
cttcagctgtgtcaaatgttcctaaccatactctagctgcnnnnnnngggtcacgtatttcagctgcccattttccccatggtctc |
238 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| ||||| || || | ||| || |||||||||||||||||||||||| |
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| T |
43490103 |
cttcagctgtttcaaatgttcctaaccatactcttgctgctttgaatggatctcttatctctgctgcccattttccccatggtctc |
43490188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 186
Target Start/End: Original strand, 38653171 - 38653212
Alignment:
| Q |
145 |
agctgcatcttcagctgtgtcaaatgttcctaaccatactct |
186 |
Q |
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| T |
38653171 |
agctgcatcttcagctgtttcaaatgtacctaaccatactct |
38653212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 168
Target Start/End: Complemental strand, 10554762 - 10554679
Alignment:
| Q |
85 |
agggaaattaagcttagcttttgtgcctttgaatttgaatgcagctttgtcatatgcaagagctgcatcttcagctgtgtcaaa |
168 |
Q |
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| T |
10554762 |
agggaaattaagcttggctttgtttcctttgaatctcaatgcagcttcatcataagcagtagctgcagcttcagctgtttcaaa |
10554679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 182
Target Start/End: Complemental strand, 1726292 - 1726256
Alignment:
| Q |
146 |
gctgcatcttcagctgtgtcaaatgttcctaaccata |
182 |
Q |
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| T |
1726292 |
gctgcatcttctgctgtttcaaatgttcctaaccata |
1726256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 181
Target Start/End: Complemental strand, 15403676 - 15403640
Alignment:
| Q |
145 |
agctgcatcttcagctgtgtcaaatgttcctaaccat |
181 |
Q |
| |
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|||||| |||||||||||||||||||| ||||||||| |
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| T |
15403676 |
agctgcttcttcagctgtgtcaaatgtacctaaccat |
15403640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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