View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2815_low_24 (Length: 235)
Name: NF2815_low_24
Description: NF2815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2815_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 60 - 234
Target Start/End: Original strand, 54849220 - 54849395
Alignment:
| Q |
60 |
tgttttcaaatgtgtaacataaacaa-taatgtacattcatgcatctttataagtcgttatgacttgaaagtgtagggaaattaattaacctcccaaagt |
158 |
Q |
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| T |
54849220 |
tgttttcaaatgtgtaacataaacaaataatgtacattcatgcatctttataagtcgttatgacttgaaagtgtaggggaattaattaacctcccaaagt |
54849319 |
T |
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| Q |
159 |
gttccaaatgtttgaatctcaattagaattattacaatgtatatactatattcgtccctaattataagaccttttt |
234 |
Q |
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||| |||||||||||||||| ||||||||||||||||||||||||||| | ||| ||||||||||||||||||| |
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| T |
54849320 |
gtttcaaatgtttgaatctccattagaattattacaatgtatatactacctctgtctctaattataagaccttttt |
54849395 |
T |
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