View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2815_low_9 (Length: 423)
Name: NF2815_low_9
Description: NF2815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2815_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 392; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 18 - 413
Target Start/End: Complemental strand, 6292504 - 6292109
Alignment:
| Q |
18 |
attctaggattcaaaggtgtcccttgattcgccatttgtctcttcaacaagtttctattataagttgcagcattttgcggagaagcaccaacctcattcg |
117 |
Q |
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| T |
6292504 |
attctaggattcaaaggtgtcccttgattcgccatttgtctcttcaacaagtttctattataagttgcagcattttgcggagaagcaccaacctcattcg |
6292405 |
T |
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| Q |
118 |
ggtcgcctctagaaggccaacctgtctcggataccctaacttcaatccctttaaatcccattttagctatggaaaatgatacagcatcagccatagcata |
217 |
Q |
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| T |
6292404 |
ggtcgcctctagaaggccaacccgtctcggataccctaacttcaatccctttaaatcccattttagctatggaaaatgatacagcatcagccatagcata |
6292305 |
T |
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| Q |
218 |
aagcatgttatcataatgtagatttgtggtaggatcaaccattccttgactaggattaaataaaacatagtccaaaggaattgaatctggatcatcttta |
317 |
Q |
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| T |
6292304 |
aagcatgttatcataatgtagatttgtggtaggatcaaccattccttgactaggattaaataaaacatagtccaaaggaattgaatctggatcatcttta |
6292205 |
T |
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| Q |
318 |
tatgcaaagtaagggtaagcattgatccaaaaaggtgcttttgttgtttgcaagaagttcaaaaattggtacatcatgctagagatttcgcctttg |
413 |
Q |
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| T |
6292204 |
tatgcaaagtaagggtaagcattgatccaaaaaggtgcttttgttgtttgcaagaagttcaaaaattggtacatcatgctagagatttcgcctttg |
6292109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 145
Target Start/End: Complemental strand, 36381911 - 36381823
Alignment:
| Q |
57 |
ctcttcaacaagtttctattataagttgcagcattttgcggagaagcaccaacctcattcgggtcgcctctagaaggccaacctgtctc |
145 |
Q |
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| T |
36381911 |
ctcttcaacaaattactatgataaatttctgcattctgtagtgaagctccaacctcatccggatcacctttagaaggccaacctgtctc |
36381823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 18 - 384
Target Start/End: Original strand, 32856322 - 32856688
Alignment:
| Q |
18 |
attctaggattcaaaggtgtcccttgattcgccatttgtctcttcaacaagtttctattataagttgcagcattttgcggagaagcaccaacctcattcg |
117 |
Q |
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||||||||||||||||||||||||| |||| |||||||||| |||| || || | |||||| || ||||||||| | || ||||||| |||| | |
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| T |
32856322 |
attctaggattcaaaggtgtcccttcattcttcatttgtctcctcaataaattcttgttataaatttcagcatttttcaatgatgcaccaatttcatcag |
32856421 |
T |
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| Q |
118 |
ggtcgcctctagaaggccaacctgtctcggataccctaacttcaatccctttaaatcccattttagctatggaaaatgatacagcatcagccatagcata |
217 |
Q |
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||| ||| || |||||||| ||||| || ||||||||||| ||||| ||||| || | |||||| || | ||||| |||||||| |||||||||| |
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| T |
32856422 |
agtcacctttacttggccaaccagtctcagaaaccctaacttctatcccattaaaacctaatttagcaattgcaaatgtaacagcatctaccatagcata |
32856521 |
T |
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| Q |
218 |
aagcatgttatcataatgtagatttgtggtaggatcaaccattccttgactaggattaaataaaacatagtccaaaggaattgaatctggatcatcttta |
317 |
Q |
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|||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||| |||||||| |||| ||| || || |||| ||| |
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| T |
32856522 |
aagcatgttatcataatgtaaatttgtattaggatcaaccattccttggttaggattaaataatacatagtctaaagatatttgattagggtcattctta |
32856621 |
T |
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| Q |
318 |
tatgcaaagtaagggtaagcattgatccaaaaaggtgcttttgttgtttgcaagaagttcaaaaatt |
384 |
Q |
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|| ||||| ||||| |||||||||| |||||| |||| ||||||| || ||| ||||||||||||| |
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| T |
32856622 |
taagcaaaataaggataagcattgacccaaaagggtgattttgtttttgacaaaaagttcaaaaatt |
32856688 |
T |
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