View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2816_high_15 (Length: 404)

Name: NF2816_high_15
Description: NF2816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2816_high_15
NF2816_high_15
[»] chr1 (1 HSPs)
chr1 (10-386)||(51611194-51611573)


Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 10 - 386
Target Start/End: Complemental strand, 51611573 - 51611194
Alignment:
Q  10 aagaaaatcgctgtttgaaggagttagttatgcaattacgcatgaaaaactcnnnnnnn-tatagcatgcaccaactgaaagtggtacaccaggttataa 108  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||        ||||||||| ||||||||||||||||||||||||||||||    
T  51611573 aagaaaatcgctgtttgaaggagttagttatgcaattgcgcatgaaaaactcaaaaaaaatatagcatgtaccaactgaaagtggtacaccaggttataa 51611474  T
Q  109 cagatgttgttggatgcttatatatttttaaaaatctaattctcccagtttaggtgctagtcaaaacactaaacagtcaaatcaaatgaaccaactactt 208  Q
    ||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51611473 cagatgttgttggatgcttatatttttt--aaaatctaattctcccagtttaggtgctagtcaaaacactaaacagtcaaatcaaatgaaccaactactt 51611376  T
Q  209 tatttttctacttag----nnnnnnnnnnnnnnnnnnatttgagaggattctacttaaatttgatgattagactaataaaattcatcaaatagaaaagga 304  Q
    |||||||||||||||                      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51611375 tatttttctacttagtttttatttttattttttttttatttgagaggattctacttaaatttgatgattagactaataaaattcatcaaatagaaaagga 51611276  T
Q  305 tatgttaaaaagaatatgctacacnnnnnnngtttgattgtacataccatgaagacaatagtttattatgcattgtcatcct 386  Q
    ||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51611275 tatgttaaaaagaatatgctacactttttttgtttgattgtacataccatgaagacaatagtttattatgcattgtcatcct 51611194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University