View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2816_high_18 (Length: 359)
Name: NF2816_high_18
Description: NF2816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2816_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 16 - 344
Target Start/End: Complemental strand, 12273591 - 12273263
Alignment:
| Q |
16 |
attacaacagcagaatcacgcgtagcttcattccttaactcattcctttgcttaagattcaaaggccattgaaaaaccctagcatgctcatcaaaattaa |
115 |
Q |
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| T |
12273591 |
attacaacagcagaatcacgcgtagcttcattccttaactcattcctttgcttaagattcaaaggccattgaaaaaccctagcatgctcatcaaaattaa |
12273492 |
T |
|
| Q |
116 |
gaacttccctatcattctcgctacgaatccaaagcggttcattcatttgacacatcttaacaagctcagccatagaagaagctgcaagttccatagcaag |
215 |
Q |
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| T |
12273491 |
gaacttctctatcattctcgctacgaatccaaagtggttcattcatttgacacatcttaacaagctcagccatagaagaagctgcaagttccatagcaag |
12273392 |
T |
|
| Q |
216 |
tgatttttcatcttccattaataagagacctccctcttgaaattgtgaaggttcaggtggtaacatagggacaggaatcatttcagtgcatggtggcatt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12273391 |
tgatttttcatcttccattaataagagacctccctcttgaaattgtgaaggttcaggtggtaacatagggacaggaatcatttcagtgcatggtggcatt |
12273292 |
T |
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| Q |
316 |
ggatcaaagtgccttggataaatgttcat |
344 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
12273291 |
ggatcaaagtgccttggataaatgttcat |
12273263 |
T |
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