View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2816_high_25 (Length: 245)
Name: NF2816_high_25
Description: NF2816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2816_high_25 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 14 - 222
Target Start/End: Complemental strand, 13477449 - 13477241
Alignment:
| Q |
14 |
aggtgagtgacaataaaggggaatacaacacaaaaacagcagtacaacagaactgggtgctctgttacactgccaacacaatgtctaatttctttctttg |
113 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13477449 |
aggtgagtgacaataaaggggaacacaacacaaaaacagcagtacaacagaactgggtgctctgttacactgccaacacaatgtctaatttctttctttg |
13477350 |
T |
|
| Q |
114 |
atacgtcccttttcaaccaaagattaactgcacctctctttacttttactttccattccatcatcaaagcctctaacaaaaacctcacacgtgtgatatt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13477349 |
atacgtcccttttcaaccaaagattaactgcacctctctttacttttactttccattccatcatcaaagcctctaacaaaaacctcacacgtgtgatatt |
13477250 |
T |
|
| Q |
214 |
cttttatat |
222 |
Q |
| |
|
||||||||| |
|
|
| T |
13477249 |
cttttatat |
13477241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University