View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2816_high_3 (Length: 597)
Name: NF2816_high_3
Description: NF2816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2816_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 157; Significance: 3e-83; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 248 - 437
Target Start/End: Original strand, 1504527 - 1504712
Alignment:
| Q |
248 |
catatgatatatctctcatacatagagagtattatgtaaatattttttcaaaatataactacacttattatattttatgtaaaagaatttctaaccctcc |
347 |
Q |
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| T |
1504527 |
catatgatatatctctcata----gagagtattatgtaaatattttttcaaaatataactacacttattatattttatgcaaaagaatttctaaccctcc |
1504622 |
T |
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| Q |
348 |
attcgattagtttctggatccgtccttgtctaaaagcatatagcatcgagcattataactcgcaaagttagagatatttatttagtcttg |
437 |
Q |
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| T |
1504623 |
attcaattagtttctggatccgtccctgtctaaaagcatatagcatcgagcattataactcgcaaagttagagatattaatttagtcttg |
1504712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 38 - 207
Target Start/End: Original strand, 1504355 - 1504526
Alignment:
| Q |
38 |
ttttttaagggagaccgtataatttctctttttctaaagtatgggaaaactaatgctatttcccttttcttacccactcctacaaccatgcaagagtcac |
137 |
Q |
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| T |
1504355 |
ttttttaagggagaccgtataatttttctttt-ctaaagtatgggaaaactaatgctatttcccttttcttacccactcctacaatcatgcaagagtcac |
1504453 |
T |
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| Q |
138 |
aa---ctcttgggttagggccagagccatatcattatcatgcatatatacctttatttccatcacacatgttc |
207 |
Q |
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| T |
1504454 |
aacaactcttgggttagggccagagccatatcattatcatgcatatatacctttatttccatcacacatgttc |
1504526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 501 - 593
Target Start/End: Original strand, 1504775 - 1504867
Alignment:
| Q |
501 |
gtgttccacctaatataaattttctttttgttagcttnnnnnnnntccaacacgccatcaaatatctagattcagtacgaaacatcttttctt |
593 |
Q |
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| T |
1504775 |
gtgttccacctaatataaattttctttttgttagcttaaaaaaaatccaacatgccatcaaatatctagattcagtacgaaacatctattctt |
1504867 |
T |
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