View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2816_low_1 (Length: 832)
Name: NF2816_low_1
Description: NF2816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2816_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 429 - 746
Target Start/End: Original strand, 21113104 - 21113424
Alignment:
| Q |
429 |
agatttttatttataatacgactagaggatgtaagaaacaaaatataataaaattatcttaaagtcgacctc---ttataaatgtaaaagatattcttca |
525 |
Q |
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| T |
21113104 |
agatttttgtttataatacgactagagaatgtaagaaacaaaatataataaaaatatcttaaagtcgacctcctcttaaaaatgtaaaagatattcttca |
21113203 |
T |
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| Q |
526 |
aaatatttatttaatacaatttatttgttcttaataaacatccaaaaagactagttatcacttttaatttatattactacacctatcccaatagtataat |
625 |
Q |
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| T |
21113204 |
aaatgtttttttaatataatttatttgttcttaataaacatccaaaaagactagttatcacttttaatttatattactacacctatcccaatagtataat |
21113303 |
T |
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| Q |
626 |
acacccgatattttttaaattattcctgttaaaacaaaatatatccttccaattatagaggttgacaaaatcatcaatttcataatccaaattgaatgct |
725 |
Q |
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| T |
21113304 |
acacccgatattttttaaattattcctgttaaaacaaaatatatccttccaattatagaggttgacaaaatcatcaatttcataatccaaattgaatgct |
21113403 |
T |
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| Q |
726 |
cgtggacatatcatgacatag |
746 |
Q |
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| T |
21113404 |
cgtggacatatcatgacatag |
21113424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 14 - 299
Target Start/End: Original strand, 21112685 - 21112974
Alignment:
| Q |
14 |
tcatcaacattctccatatattttaattttaaatacaaaacaaagggtacatgttatttgcacaccttgcaaaatcattcttagaatatttagttctgaa |
113 |
Q |
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| T |
21112685 |
tcatcaacattctccatatattttaattttaaatacaaaacaaagggtacatgttatttgcacaccttgcaaagtcattcttagaatatttagttctgaa |
21112784 |
T |
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| Q |
114 |
cacaaaaatctcctccgatatgttttcctaattgacatacacaaatccaataattactcatatcgaggaaatcaaaaatttgagagcaacagacttaacc |
213 |
Q |
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| T |
21112785 |
tacaaaaatctcctccgatatgttttcctaattgacatacacaaatccaataattactcatatcgaggaaatcaaaaatttgagagcaagagacttaacc |
21112884 |
T |
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| Q |
214 |
tctttctacaaaagtcaacatcg----attaatttatnnnnnnnncgctaacaaatgttattatagaaatatacctttcggtcactattg |
299 |
Q |
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| T |
21112885 |
tctttctacaaaagtcaacatcgattaattaatttataaaaaaaacgctaacaaatgttattatagaaatatacctttcaatcactattg |
21112974 |
T |
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