View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2816_low_10 (Length: 495)
Name: NF2816_low_10
Description: NF2816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2816_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 20 - 485
Target Start/End: Complemental strand, 2701078 - 2700609
Alignment:
| Q |
20 |
cttggtaaactaagaagtagcaaacaacaaaactctgcctctatctttcttgaaactatcaatggaaggagaaggtgataagtggcagcagtgtaatgaa |
119 |
Q |
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| T |
2701078 |
cttggtaaactaagaagtagcaaacaacaaaactctacctctatctttcttgaaactatcaatggaaggtgaaggtgataagtggcagcagtgtagtgaa |
2700979 |
T |
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| Q |
120 |
gatgttgctctgaatattcccttaatagcagaacatgaaggaagccaaatttctggtaacagtcccagtaacaatgtcaccacatcattccttaaaactt |
219 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |
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| T |
2700978 |
gatgttgctctgaatattcccttaatagcagagcatgaaggaagccaaatttctggcaacaatcccagtaacaatgtcaccacatcattccttaaaactt |
2700879 |
T |
|
| Q |
220 |
gtttcaatggtctcaatgctttatcaggtaaccttattaactttagttgttttgtgagtatgttttacaaaacatagatgtttttcaataaaatttaaat |
319 |
Q |
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| T |
2700878 |
gtttcaatggtctcaatgctttatcaggtaaccttattaactttagttgttttgtgagtatgttttacaaaacatagatgtttttcaataaaatttaaat |
2700779 |
T |
|
| Q |
320 |
tagannnnnnngttgttattgttgttgttataattaattggcaattattagatttgtttaacctaaaaccatagttttgtgatgctaattatgttggtcc |
419 |
Q |
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|||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
2700778 |
tagatttttttgttgttattgttgttgttatatttaattggcaattattagatttgtttagcctaaaaccatagttttgtgatgctaattatgttggtcc |
2700679 |
T |
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| Q |
420 |
ttaattagtaaaagatata----taatgtgtggtgctatactcttctatgggctatcttcttgtcctatg |
485 |
Q |
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| T |
2700678 |
ttaattagtaaaagatatataattaatgtgtggtgctatactcttgtatgtgctatcttgttgtcctatg |
2700609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 93; Significance: 4e-45; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 63 - 274
Target Start/End: Complemental strand, 10843596 - 10843382
Alignment:
| Q |
63 |
tctttcttgaaactatcaatggaaggagaaggtgataagtggcagcagtgtaatgaagatgttgctctgaatattcccttaatagcagaacatgaaggaa |
162 |
Q |
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|||| ||||||| |||||||||||||||||||||||||||||||| |||| |||||||| | |||||||| |||| | || ||||||||||||||| |
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| T |
10843596 |
tcttccttgaaaatatcaatggaaggagaaggtgataagtggcagaggtgtgatgaagatatctctctgaatgttcctcttttaacagaacatgaaggaa |
10843497 |
T |
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| Q |
163 |
gccaaatttctggtaacagtcccagtaacaatgtc---accacatcattccttaaaacttgtttcaatggtctcaatgctttatcaggtaaccttattaa |
259 |
Q |
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| T |
10843496 |
accaaatttctggtagcggtcccaacgacaatattcttaccacttctttccttaaaacttgtttcaatggtctcaatgctttaacaggtaaccttattaa |
10843397 |
T |
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| Q |
260 |
ctttagttgttttgt |
274 |
Q |
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| T |
10843396 |
ccctagttgttttgt |
10843382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 351 - 444
Target Start/End: Complemental strand, 10843325 - 10843231
Alignment:
| Q |
351 |
aattaattggcaattattagatttgtttaacctaaaaccatagttttgtgatgctaattatgttggtcc-ttaattagtaaaagatatataatgt |
444 |
Q |
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||||||||| || ||| | |||| | ||| |||||||||| || ||||||||| ||||||||||||||| ||||| ||||||||||||||||| |
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| T |
10843325 |
aattaattgacagttaatggattagattagcctaaaaccagagatttgtgatgataattatgttggtccacaaattaataaaagatatataatgt |
10843231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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