View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2816_low_11 (Length: 494)
Name: NF2816_low_11
Description: NF2816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2816_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 132; Significance: 2e-68; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 174 - 415
Target Start/End: Original strand, 10426116 - 10426336
Alignment:
| Q |
174 |
ctaattggaacggtgaatgtaagaataatacctccaagcagattcctatacttcttcagcggatttaaaaagctaagggacattttccatggatcaattt |
273 |
Q |
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| T |
10426116 |
ctaattggaacagtgaatgtaagaataatacctcccagcagattcctaaactacttc-gcggatttaaaaag-----ggacaatttccat---------- |
10426199 |
T |
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| Q |
274 |
ttcgtcgatcaaaactcaacgcaagggtaaagaagaaacagtagaaaaacagggtggaaggataagggaaaatgggataggtgagaagaaaaggagagaa |
373 |
Q |
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| T |
10426200 |
-----cgatcaaaactcaacgcaagggtaaagaagaaacagtagaaaaatagggtggaaggataagggaaaatgggataggtgagaagaaaaggagagaa |
10426294 |
T |
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| Q |
374 |
taatgtggagaaccgagatactacgatgaagcgttgaattaa |
415 |
Q |
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| T |
10426295 |
taatgtggagaacggagatattacgatgaagcgttgaattaa |
10426336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 10425352 - 10425498
Alignment:
| Q |
1 |
tctcatgggtgttctcctcttcagtgacacgatttcaagacggcttggcaggacgatt-caatcccgggtaatgagtgagtagaagtcttaattagaagc |
99 |
Q |
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| T |
10425352 |
tctcatgggtgttctcctcttcagtgacacgatttcaagacggcttggcatgacgatttcaatcctgggtaatgagtgagtagaagtcttaattagaagc |
10425451 |
T |
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| Q |
100 |
ggattatattgtgtttctatgtgggaagatatttgacggttattaag |
146 |
Q |
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| T |
10425452 |
ggattatattgtgtttctatgtgggaagatatttgaaggttattaag |
10425498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 277 - 322
Target Start/End: Original strand, 37686433 - 37686478
Alignment:
| Q |
277 |
gtcgatcaaaactcaacgcaagggtaaagaagaaacagtagaaaaa |
322 |
Q |
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| T |
37686433 |
gtcgatcaaaactcaacgcaagggtaaagaagaaacggtagaaaaa |
37686478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 446 - 494
Target Start/End: Original strand, 10426677 - 10426724
Alignment:
| Q |
446 |
agcaagccctgtaaattctagataagaccttggaggcatgtgtatcatt |
494 |
Q |
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| T |
10426677 |
agcaagctctgtaaattctagataagacctt-gaggcatgtgtatcatt |
10426724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 187 - 441
Target Start/End: Complemental strand, 24819656 - 24819406
Alignment:
| Q |
187 |
tgaatgtaagaataatacctccaagcagattcctatacttcttcagcggatttaaaaagctaagggacattttccatggatcaatttttcgtcgatcaaa |
286 |
Q |
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| T |
24819656 |
tgaatataagaataatacctcgcagcagattcctaaacttcttgagcggatttaaaaag-----ggacattttccgttgatcaattttccgttgatcaaa |
24819562 |
T |
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| Q |
287 |
actcaacgcaagggtaaagaagaaacagtagaaaaacagggtggaaggataagggaaaatgggatag-gtgagaagaaaaggagagaataatgtggagaa |
385 |
Q |
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| T |
24819561 |
actcagcgaaagggtcaaggagaaaccttagaaaaatagggtggaaggatgagggaagatgcgatagagtgagaggaaaaagagaaaataatgtggagac |
24819462 |
T |
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| Q |
386 |
ccgagatactacgatgaagcgttgaattaaaaaggaacaaagacgaaaagaatagc |
441 |
Q |
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| T |
24819461 |
tgaacatattacgatggagcgttgaattaaaattgaatagagaggaaaagaatagc |
24819406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 280 - 322
Target Start/End: Complemental strand, 7497305 - 7497263
Alignment:
| Q |
280 |
gatcaaaactcaacgcaagggtaaagaagaaacagtagaaaaa |
322 |
Q |
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| T |
7497305 |
gatcaaaactcaacgcaagggtaaagaagaaacggtagaaaaa |
7497263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 235
Target Start/End: Original strand, 18940915 - 18940976
Alignment:
| Q |
174 |
ctaattggaacggtgaatgtaagaataatacctccaagcagattcctatacttcttcagcgg |
235 |
Q |
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| T |
18940915 |
ctaattggaagggtgattgtaagaataatacctctttgcagattcctgatcttcttcagcgg |
18940976 |
T |
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