View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2816_low_14 (Length: 432)
Name: NF2816_low_14
Description: NF2816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2816_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 16 - 424
Target Start/End: Complemental strand, 52592632 - 52592224
Alignment:
| Q |
16 |
cataatcatcgccaagacaattgtttcccattgaaaaagatatcaagctgatttcattgttgtgaagagaccagaagtgaggttcttgttcccaacaagt |
115 |
Q |
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| T |
52592632 |
cataatcatcgccaagacaattgtttcccattgaaaaagatatcaagctgatttcattgttgtgaagagaccagaagtgaggttcttgttcccaacaagt |
52592533 |
T |
|
| Q |
116 |
gctgatcttgtcttgtaacttagaatgtatcccaaccaagcattctcttcagggtcctatatggatatgttcacctcgagtcctttgttaccttacaatt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52592532 |
gctgatcttgtcttgtaacttagaatgtatcccaaccaagcattctcttcagggtcctatatggatatgttcacctcgagtcctttgttaccttacaatt |
52592433 |
T |
|
| Q |
216 |
actacaatgaatctgtagcagaacaaaatggaatcaagtttaacacgcctataggcgacacagtgactatgcaatccattgatgagcattccaatgctta |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52592432 |
actacaatgaatctgtagcagaacaaaatggaatcaagtttaacatgcctataggcgacacagtgactatgcaatccattgatgagcattccaatgctta |
52592333 |
T |
|
| Q |
316 |
caactctcatgtagatgagcaaagtatacaatgccaagagttatctcttaggctcgggacactactgccttccaatgcatctgtccctccatttcaatac |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
52592332 |
caactctcatgtagatgagcaaagtatacaatgccaagagttatctcttaggctcgggacactactgccttccaatgtatctgtccctccatttcaatac |
52592233 |
T |
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| Q |
416 |
cagtataat |
424 |
Q |
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||||||||| |
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| T |
52592232 |
cagtataat |
52592224 |
T |
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