View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2816_low_15 (Length: 427)

Name: NF2816_low_15
Description: NF2816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2816_low_15
NF2816_low_15
[»] chr3 (3 HSPs)
chr3 (229-412)||(7553098-7553270)
chr3 (13-100)||(7552928-7553015)
chr3 (142-195)||(7553011-7553064)


Alignment Details
Target: chr3 (Bit Score: 96; Significance: 6e-47; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 229 - 412
Target Start/End: Original strand, 7553098 - 7553270
Alignment:
Q  229 tctaattaatcaaaggaaatttacaaagctacccttaaattaaaaaatggtttgaatataatagtaggttggtattttagttaaaaacaagtggagttag 328  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||     ||||||| |||||||||||||||||||||||||||||||||    
T  7553098 tctaattaaccaaaggaaatttacaaagctacccttaaattaaaaaatggtttg-----aatagtaagttggtattttagttaaaaacaagtggagttag 7553192  T
Q  329 aatcgttccttcnnnnnnnnnnnnnnnnngtggagttagaattgttgatttattccttcgtatttttgtgtgagagttggttaa 412  Q
    ||||||||||||                 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  7553193 aatcgttccttc------aaaaaaaaaaagtggagttagaattgttgatttattccttcgtatttttgtgtgagagtaggttaa 7553270  T

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Target: chr3; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 13 - 100
Target Start/End: Original strand, 7552928 - 7553015
Alignment:
Q  13 aatatgttaccttagaaataaagaaaaattcttatgataataacttcatattagtatcatcatgatttgcaatttataaactctcata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7552928 aatatgttaccttagaaataaagaaaaattcttatgataataacttcatattagtatcatcatgatttgcaatttataaactctcata 7553015  T

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Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 7553011 - 7553064
Alignment:
Q  142 tcataaagcagctacctaggaatccaaggtggggaaaaaacctgggatggttcg 195  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  7553011 tcataaagcaactacctaggaatccaaggtggggaaaaaacctgggatggttcg 7553064  T

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